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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes

Christopher D Herring, Bernhard ？ Palsson

Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes

Roxana Yockteng, Sylvain Marthey, Hélène Chiapello, Annie Gendrault, Michael E Hood, Fran？ois Rodolphe, Benjamin Devier, Patrick Wincker, Carole Dossat, Tatiana Giraud

Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences

Daniel Rico, Juan M Vaquerizas, Hernán Dopazo, Lisardo Boscá

Short-term oleoyl-estrone treatment affects capacity to manage lipids in rat adipose tissue

Anna Salas, Véronique Noé, Carlos J Ciudad, M Mar Romero, Xavier Remesar, Montserrat Esteve

Diverse genome structures of Salmonella paratyphi C

Wei-Qiao Liu, Gui-Rong Liu, Jun-Qian Li, Guo-Min Xu, Danni Qi, Xiao-Yan He, Juan Deng, Feng-Min Zhang, Randal N Johnston, Shu-Lin Liu

Differential gene expression and Hog1 interaction with osmoresponsive genes in the extremely halotolerant black yeast Hortaea werneckii

Toma？ Vaupoti？, Ana Plemenita？

Validation of rice genome sequence by optical mapping

Shiguo Zhou, Michael C Bechner, Michael Place, Chris P Churas, Louise Pape, Sally A Leong, Rod Runnheim, Dan K Forrest, Steve Goldstein, Miron Livny, David C Schwartz

EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues

Karsten Scheibye-Alsing, Susanna Cirera, Michael J Gilchrist, Merete Fredholm, Jan Gorodkin

Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method

Feng-Biao Guo, Xiu-Juan Yu

Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture

Stephen J Bruce, Brooke B Gardiner, Les J Burke, M Milena Gongora, Sean M Grimmond, Andrew C Perkins

Identification of genes that regulate multiple cellular processes/responses in the context of lipotoxicity to hepatoma cells

Shireesh Srivastava, Zheng Li, Xuerui Yang, Matthew Yedwabnick, Stephen Shaw, Christina Chan

A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus

Shoba Ranganathan, Shivashankar H Nagaraj, Min Hu, Christina Strube, Thomas Schnieder, Robin B Gasser

End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries

Yoshitaka Suetsugu, Hiroshi Minami, Michihiko Shimomura, Shun-ichi Sasanuma, Junko Narukawa, Kazuei Mita, Kimiko Yamamoto

Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications

Nicol Siegel, Simone Hoegg, Walter Salzburger, Ingo Braasch, Axel Meyer

Comparative genomic hybridizations reveal absence of large Streptomyces coelicolor genomic islands in Streptomyces lividans

Karthik P Jayapal, Wei Lian, Frank Glod, David H Sherman, Wei-Shou Hu

GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization

Vaibhav Vindal, Katta Suma, Akash Ranjan

Fungal CSL transcription factors

Martin P？evorovsky, Franti？ek P？ta, Petr Folk

Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomes

Chi Chen, Carton W Chen

A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences

Joseph C Lee, David Stiles, Jun Lu, Margaret C Cam

A rapid genome-wide response to Drosophila melanogaster social interactions

Ginger E Carney

Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon

Martin Schuster, E Peter Greenberg

Characterizing partial AZFc deletions of the Y chromosome with amplicon-specific sequence markers

Paulo Navarro-Costa, Luísa Pereira, Cíntia Alves, Leonor Gusm？o, Carmen Proen？a, Pedro Marques-Vidal, Tiago Rocha, Sónia C Correia, Sónia Jorge, António Neves, Ana P Soares, Joaquim Nunes, Carlos Calhaz-Jorge, António Amorim, Carlos E Plancha, Jo？o Gon？alves

Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection

Neil S Graham, Martin R Broadley, John P Hammond, Philip J White, Sean T May

RBM6-RBM5 transcription-induced chimeras are differentially expressed in tumours

Ke Wang, Gino Ubriaco, Leslie C Sutherland

Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator

Laetitia Houot, Martin Floutier, Benoit Marteyn, Magali Michaut, Antoine Picciocchi, Pierre Legrain, Jean-Christophe Aude, Corinne Cassier-Chauvat, Franck Chauvat

Multiple splice variants within the bovine silver homologue (SILV) gene affecting coat color in cattle indicate a function additional to fibril formation in melanophores

Christa Kuehn, Rosemarie Weikard

Sample matching by inferred agonal stress in gene expression analyses of the brain

Jun Z Li, Fan Meng, Larisa Tsavaler, Simon J Evans, Prabhakara V Choudary, Hiroaki Tomita, Marquis P Vawter, David Walsh, Vida Shokoohi, Tisha Chung, William E Bunney, Edward G Jones, Huda Akil, Stanley J Watson, Richard M Myers

The G protein-coupled receptor subset of the rat genome

David E Gloriam, Robert Fredriksson, Helgi B Schi？th

Collembase: a repository for springtail genomics and soil quality assessment

Martijn JTN Timmermans, Muriel E de Boer, Benjamin Nota, Tjalf E de Boer, Janine Mari？n, Rene M Klein-Lankhorst, Nico M van Straalen, Dick Roelofs

Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray

Xujing Wang, Shuang Jia, Lisa Meyer, Maryam B Yassai, Yuri N Naumov, Jack Gorski, Martin J Hessner

Unravelling the hidden heterogeneities of diffuse large B-cell lymphoma based on coupled two-way clustering

Wei Zhang, Li Li, Xia Li, Wei Jiang, Jianmin Huo, Yadong Wang, Meihua Lin, Shaoqi Rao

Deep analysis of cellular transcriptomes – LongSAGE versus classic MPSS

Lawrence Hene, Vattipally B Sreenu, Mai T Vuong, S Hussain I Abidi, Julian K Sutton, Sarah L Rowland-Jones, Simon J Davis, Edward J Evans

Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison

Eric CH Ho, Matt J Cahill, Barry J Saville

Detection of RNA structures in porcine EST data and related mammals

Stefan E Seemann, Michael J Gilchrist, Ivo L Hofacker, Peter F Stadler, Jan Gorodkin

A Marfan syndrome gene expression phenotype in cultured skin fibroblasts

Zizhen Yao, Jochen C Jaeger, Walter L Ruzzo, Cecile Z Morale, Mary Emond, Uta Francke, Dianna M Milewicz, Stephen M Schwartz, Eileen R Mulvihill

Optical mapping as a routine tool for bacterial genome sequence finishing

Phil Latreille, Stacie Norton, Barry S Goldman, John Henkhaus, Nancy Miller, Brad Barbazuk, Helge B Bode, Creg Darby, Zijin Du, Steve Forst, Sophie Gaudriault, Brad Goodner, Heidi Goodrich-Blair, Steven Slater

Adaptive expression responses in the Pol-γ null strain of S. pombe depleted of mitochondrial genome

Zhaoqing Chu, Juntao Li, Majid Eshaghi, R Krishna Karuturi, Kui Lin, Jianhua Liu

The functional modulation of epigenetic regulators by alternative splicing

Sergio Lois, Noemí Blanco, Marian Martínez-Balbás, Xavier de la Cruz

Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury

Rafaela M Maia, Valeria Valente, Marco AV Cunha, Josane F Sousa, Daniela D Araujo, Wilson A Silva, Marco A Zago, Emmanuel Dias-Neto, Sandro J Souza, Andrew JG Simpson, Nadia Monesi, Ricardo GP Ramos, Enilza M Espreafico, Maria L Pa？ó-Larson

Comparative genomics of bacterial and plant folate synthesis and salvage: predictions and validations

Valérie de Crécy-Lagard, Basma El Yacoubi, Rocío de la Garza, Alexandre Noiriel, Andrew D Hanson

Cloning and expression of a zebrafish SCN1B ortholog and identification of a species-specific splice variant

Amanda J Fein, Laurence S Meadows, Chunling Chen, Emily A Slat, Lori L Isom

Faster rates of post-puberty kidney deterioration in males is correlated with elevated oxidative stress in males vs females at early puberty

Li Li, Susanne N Boehn, Xiaolei Yu, Qingqin Zhang, Marc Kenzelmann, Dieter Techel, Salah A Mohamed, Petra Jakob, Bettina Kraenzlin, Sigrid Hoffmann, Norbert Gretz

Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts

Xianwu Guo, Santiago Castillo-Ramírez, Víctor González, Patricia Bustos, José Luís Fernández-Vázquez, Rosa Santamaría, Jesús Arellano, Miguel A Cevallos, Guillermo Dávila

EuMicroSatdb: A database for microsatellites in the sequenced genomes of eukaryotes

Veenu Aishwarya, Atul Grover, Prakash C Sharma

New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features

Caroline Tapparel, Thomas Junier, Daniel Gerlach, Samuel Cordey, Sandra Van Belle, Luc Perrin, Evgeny M Zdobnov, Laurent Kaiser

Mitochondrial lineage M1 traces an early human backflow to Africa

Ana M González, José M Larruga, Khaled K Abu-Amero, Yufei Shi, José Pestano, Vicente M Cabrera

Quantitative assessment of relationship between sequence similarity and function similarity

Trupti Joshi, Dong Xu

Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; analyzing variations in immune regulator genes of hay-fever samples

Janne Pullat, Robert Fleischer, Nikolaus Becker, Markus Beier, Andres Metspalu, J？rg D Hoheisel

Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

Ian Armstead, Lin Huang, Julie King, Helen Ougham, Howard Thomas, Ian King

Biomarker discovery for colon cancer using a 761 gene RT-PCR assay

Kim M Clark-Langone, Jenny Y Wu, Chithra Sangli, Angela Chen, James L Snable, Anhthu Nguyen, James R Hackett, Joffre Baker, Greg Yothers, Chungyeul Kim, Maureen T Cronin

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