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ISSN: 2333-9721
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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Transcriptome analysis of the responses of Staphylococcus aureus to antimicrobial peptides and characterization of the roles of vraDE and vraSR in antimicrobial resistance

Milla Pieti？inen, Patrice Fran？ois, Hanne-Leena Hyyryl？inen, Manuela Tangomo, Vera Sass, Hans-Georg Sahl, Jacques Schrenzel, Vesa P Kontinen

Gene array analysis of adrenal glands in broiler chickens following ACTH treatment

Clara Bureau, Christelle Hennequet-Antier, Michel Couty, Daniel Guémené

Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei

Sarah Kabani, Katelyn Fenn, Alan Ross, Al Ivens, Terry K Smith, Peter Ghazal, Keith Matthews

A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus

M Carmen Marques, Hugo Alonso-Cantabrana, Javier Forment, Raquel Arribas, Santiago Alamar, Vicente Conejero, Miguel A Perez-Amador

Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1

Geir Mathiesen, Anita Sveen, May Brurberg, Lasse Fredriksen, Lars Axelsson, Vincent GH Eijsink

A flexible whole-genome microarray for transcriptomics in three-spine stickleback (Gasterosteus aculeatus)

Erica H Leder, Juha Meril？, Craig R Primmer

Allele-specific expression assays using Solexa

Bradley J Main, Ryan D Bickel, Lauren M McIntyre, Rita M Graze, Peter P Calabrese, Sergey V Nuzhdin

Improvement of the clinical applicability of the Genomic Grade Index through a qRT-PCR test performed on frozen and formalin-fixed paraffin-embedded tissues

Jér？me Toussaint, Anieta M Sieuwerts, Benjamin Haibe-Kains, Christine Desmedt, Ghizlane Rouas, Adrian L Harris, Denis Larsimont, Martine Piccart, John A Foekens, Virginie Durbecq, Christos Sotiriou

Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation

Tamara Aid-Pavlidis, Pavlos Pavlidis, T？nis Timmusk

ZifBASE: a database of zinc finger proteins and associated resources

Mannu Jayakanthan, Jayaraman Muthukumaran, Sanniyasi Chandrasekar, Konika Chawla, Ankita Punetha, Durai Sundar

MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori)

Shiping Liu, Liang Zhang, Qibin Li, Ping Zhao, Jun Duan, Daojun Cheng, Zhonghuai Xiang, Qingyou Xia

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

Sung-Chur Sim, Matthew D Robbins, Charles Chilcott, Tong Zhu, David M Francis

Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing

Wei Wang, Yejun Wang, Qing Zhang, Yan Qi, Dianjing Guo

A comparative analysis of DNA barcode microarray feature size

Ron Ammar, Andrew M Smith, Lawrence E Heisler, Guri Giaever, Corey Nislow

A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life

Crysten E Haas, Dmitry A Rodionov, Janette Kropat, Davin Malasarn, Sabeeha S Merchant, Valérie de Crécy-Lagard

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades

Frank F？rster, Chunguang Liang, Alexander Shkumatov, Daniela Beisser, Julia C Engelmann, Martina Schn？lzer, Marcus Frohme, Tobias Müller, Ralph O Schill, Thomas Dandekar

An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)

Albert Mascarell-Creus, Joaquin Ca？izares, Josep Vilarrasa-Blasi, Santiago Mora-García, José Blanca, Daniel Gonzalez-Ibeas, Montserrat Saladié, Cristina Roig, Wim Deleu, Belén Picó-Silvent, Nuria López-Bigas, Miguel A Aranda, Jordi Garcia-Mas, Fernando Nuez, Pere Puigdomènech, Ana I Ca？o-Delgado

Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?

John W Stiller, Jinling Huang, Qin Ding, Jing Tian, Carol Goodwillie

The theory of discovering rare variants via DNA sequencing

Michael C Wendl, Richard K Wilson

A comparison of reptilian and avian olfactory receptor gene repertoires: Species-specific expansion of group γ genes in birds

Silke S Steiger, Vladimir Y Kuryshev, Marcus C Stensmyr, Bart Kempenaers, Jakob C Mueller

Exploring the molecular basis of insecticide resistance in the dengue vector Aedes aegypti: a case study in Martinique Island (French West Indies)

Sébastien Marcombe, Rodolphe Poupardin, Frederic Darriet, Stéphane Reynaud, Julien Bonnet, Clare Strode, Cecile Brengues, André Yébakima, Hilary Ranson, Vincent Corbel, Jean-Philippe David

Quality control in microarray assessment of gene expression in human airway epithelium

Tina Raman, Timothy P O'Connor, Neil R Hackett, Wei Wang, Ben-Gary Harvey, Marc A Attiyeh, David T Dang, Matthew Teater, Ronald G Crystal

A functional analysis of the CREB signaling pathway using HaloCHIP-chip and high throughput reporter assays

Danette D Hartzell, Nathan D Trinklein, Jacqui Mendez, Nancy Murphy, Shelley F Aldred, Keith Wood, Marjeta Urh

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

Yong Q Gu, Yaqin Ma, Naxin Huo, John P Vogel, Frank M You, Gerard R Lazo, William M Nelson, Carol Soderlund, Jan Dvorak, Olin D Anderson, Ming-Cheng Luo

Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down

José L Costa, Paul P Eijk, Mark A van de Wiel, Derk ten Berge, Fernando Schmitt, Carmen J Narvaez, JoEllen Welsh, Bauke Ylstra

Inherent promoter bidirectionality facilitates maintenance of sequence integrity and transcription of parasitic DNA in mammalian genomes

Paul Kalitsis, Richard Saffery

Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens

Chris J Stubben, Melanie L Duffield, Ian A Cooper, Donna C Ford, Jason D Gans, Andrey V Karlyshev, Bryan Lingard, Petra CF Oyston, Anna de Rochefort, Jian Song, Brendan W Wren, Rick W Titball, Murray Wolinsky

Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex

Susanne A Thomson, William S Baldwin, Ying H Wang, Gwijun Kwon, Gerald A LeBlanc

EST and microarray analysis of horn development in Onthophagus beetles

Teiya Kijimoto, James Costello, Zuojian Tang, Armin P Moczek, Justen Andrews

Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar)

Rune Andreassen, Sigbj？rn Lunner, Bj？rn H？yheim

Phylogenetic relatedness and host plant growth form influence gene expression of the polyphagous comma butterfly (Polygonia c-album)

Hanna M Heidel-Fischer, Dalial Freitak, Niklas Janz, Lina S？derlind, Heiko Vogel, S？ren Nylin

Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics

Elisabeth Jamet, David Roujol, Hélène San-Clemente, Muhammad Irshad, Ludivine Soubigou-Taconnat, Jean-Pierre Renou, Rafael Pont-Lezica

Computational prediction of splicing regulatory elements shared by Tetrapoda organisms

Alexander Churbanov, Igor Vo？echovsky, Chindo Hicks

Regulation of intestinal epithelial cells transcriptome by enteric glial cells: impact on intestinal epithelial barrier functions

Laurianne Van Landeghem, Maxime M Mahé, Raluca Teusan, Jean Léger, Isabelle Guisle, Rémi Houlgatte, Michel Neunlist

Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes

Sylvain Foret, Robert Kucharski, Yvonne Pittelkow, Gabrielle A Lockett, Ryszard Maleszka

Development and mapping of DArT markers within the Festuca - Lolium complex

David Kopecky, Jan Barto？, Adam J Lukaszewski, James H Baird, Vladimír ？ernoch, Roland K？lliker, Odd Rognli, Helene Blois, Vanessa Caig, Thomas Lübberstedt, Bruno Studer, Paul Shaw, Jaroslav Dole？el, Andrzej Kilian

The l1-l2 regularization framework unmasks the hypoxia signature hidden in the transcriptome of a set of heterogeneous neuroblastoma cell lines

Paolo Fardin, Annalisa Barla, Sofia Mosci, Lorenzo Rosasco, Alessandro Verri, Luigi Varesio

Identification of novel androgen-responsive genes by sequencing of LongSAGE libraries

Tammy L Romanuik, Gang Wang, Robert A Holt, Steven JM Jones, Marco A Marra, Marianne D Sadar

Transposon-mediated BAC transgenesis in zebrafish and mice

Maximiliano L Suster, Kenta Sumiyama, Koichi Kawakami

Maternal high fat diet during pregnancy and lactation alters hepatic expression of insulin like growth factor-2 and key microRNAs in the adult offspring

Junlong Zhang, Fang Zhang, Xavier Didelot, Kimberley D Bruce, Felino R Cagampang, Manu Vatish, Mark Hanson, Hendrik Lehnert, Antonio Ceriello, Christopher D Byrne

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

Hindrik HD Kerstens, Richard PMA Crooijmans, Albertine Veenendaal, Bert W Dibbits, Thomas FC Chin-A-Woeng, Johan T den Dunnen, Martien AM Groenen

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

Yuen-Jong Liu, Deyou Zheng, Suganthi Balasubramanian, Nicholas Carriero, Ekta Khurana, Rebecca Robilotto, Mark B Gerstein

Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni

Kiran Palyada, Yi-Qian Sun, Annika Flint, James Butcher, Hemant Naikare, Alain Stintzi

Glycogenome expression dynamics during mouse C2C12 myoblast differentiation suggests a sequential reorganization of membrane glycoconjugates

Mathilde Janot, Aymeric Audfray, Céline Loriol, Agnès Germot, Abderrahman Maftah, Fabrice Dupuy

An expression database for roots of the model legume Medicago truncatula under salt stress

Daofeng Li, Zhen Su, Jiangli Dong, Tao Wang

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation

Kevin CH Ha, Jasmin Coulombe-Huntington, Jacek Majewski

The effect of sequencing errors on metagenomic gene prediction

Katharina J Hoff

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

Yunfeng Yang, Daniel P Harris, Feng Luo, Wenlu Xiong, Marcin Joachimiak, Liyou Wu, Paramvir Dehal, Janet Jacobsen, Zamin Yang, Anthony V Palumbo, Adam P Arkin, Jizhong Zhou

Determination of enriched histone modifications in non-genic portions of the human genome

Jeffrey A Rosenfeld, Zhibin Wang, Dustin E Schones, Keji Zhao, Rob DeSalle, Michael Q Zhang

Comparative expression pathway analysis of human and canine mammary tumors

Paolo Uva, Luigi Aurisicchio, James Watters, Andrey Loboda, Amit Kulkarni, John Castle, Fabio Palombo, Valentina Viti, Giuseppe Mesiti, Valentina Zappulli, Laura Marconato, Francesca Abramo, Gennaro Ciliberto, Armin Lahm, Nicola La Monica, Emanuele de Rinaldis

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