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Epigenetics & Chromatin

ISSN Print: 1756-8935

ISSN Online:

Website: http://www.epigeneticsandchromatin.com

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Crosstalk between SET7/9-dependent methylation and ARTD1-mediated ADP-ribosylation of histone H1.4

Ingrid Kassner, Marc Barandun, Monika Fey, Florian Rosenthal, Michael O Hottiger

Epigenetics & chromatin: interactions and processes

Henikoff Steven,Grosveld Frank

The conformational flexibility of the C-terminus of histone H4 promotes histone octamer and nucleosome stability and yeast viability

Myrriah S Chavez, Jean K Scorgie, Briana K Dennehey, Seth Noone, Jessica K Tyler, Mair EA Churchill

Lysine methyltransferase G9a is not required for DNMT3A/3B anchoring to methylated nucleosomes and maintenance of DNA methylation in somatic cells

Shikhar Sharma, Daniel S Gerke, Han F Han, Shinwu Jeong, Michael R Stallcup, Peter A Jones, Gangning Liang

Correction: HP1gamma function is required for male germ cell survival and spermatogenesis

Jeremy P Brown, J？rn Bullwinkel, Bettina Baron-Lühr, Mustafa Billur, Philipp Schneider, Heinz Winking, Prim B Singh

Deacetylation of H4-K16Ac and heterochromatin assembly in senescence

Kévin Contrepois, Jean-Yves Thuret, Régis Courbeyrette, Fran？ois Fenaille, Carl Mann

A genome-wide screen in human embryonic stem cells reveals novel sites of allele-specific histone modification associated with known disease loci

James G D Prendergast, Pin Tong, David C Hay, Susan M Farrington, Colin A M Semple

Genome-wide DNA methylation profiling of non-small cell lung carcinomas

Rejane Carvalho, Vanja Haberle, Jun Hou, Teus van Gent, Supat Thongjuea, Wilfred van IJcken, Christel Kockx, Rutger Brouwer, Erikjan Rijkers, Anieta Sieuwerts, John Foekens, Mirjam van Vroonhoven, Joachim Aerts, Frank Grosveld, Boris Lenhard, Sjaak Philipsen

Rapid genome-scale mapping of chromatin accessibility in tissue

Lars Gr？ntved, Russell Bandle, Sam John, Songjoon Baek, Hye-Jung Chung, Ying Liu, Greti Aguilera, Carl Oberholtzer, Gordon L Hager, David Levens

Knockdown of menin affects pre-mRNA processing and promoter fidelity at the interferon-gamma inducible IRF1 gene

Lauren B Auriemma, Shaili Shah, Lara M Linden, Melissa A Henriksen

Selected imprinting of INS in the marsupial

Jessica M Stringer, Shunsuke Suzuki, Andrew J Pask, Geoff Shaw, Marilyn B Renfree

MK3 controls Polycomb target gene expression via negative feedback on ERK

Peggy Prickaerts, Hanneke EC Niessen, Emmanuèle Mouchel-Vielh, Vivian EH Dahlmans, Guus GH van den Akker, Claudia Geijselaers, Michiel E Adriaens, Frank Spaapen, Yoshihiro Takihara, Ulf R Rapp, Frédérique Peronnet, Jan Voncken

The influence of DNA sequence on epigenome-induced pathologies

Richard B Meagher, Kristofer J Müssar

Spatial organization of the chicken beta-globin gene domain in erythroid cells of embryonic and adult lineages

Sergey V Ulianov, Alexey A Gavrilov, Sergey V Razin

Mediator regulates non-coding RNA transcription at fission yeast centromeres

Michael Thorsen, Heidi Hansen, Michela Venturi, Steen Holmberg, Genevieve Thon

ATP-dependent chromatin remodeling in the DNA-damage response

Hannes Lans, Jurgen A Marteijn, Wim Vermeulen

Tracking the mechanical dynamics of human embryonic stem cell chromatin

Elizabeth Hinde, Francesco Cardarelli, Aaron Chen, Michelle Khine, Enrico Gratton

HIRA dependent H3.3 deposition is required for transcriptional reprogramming following nuclear transfer to Xenopus oocytes

Jerome Jullien, Carolina Astrand, Emmanuelle Szenker, Nigel Garrett, Genevieve Almouzni, John B Gurdon

A unified phylogeny-based nomenclature for histone variants

Paul B Talbert, Kami Ahmad, Geneviève Almouzni, Juan Ausió, Frederic Berger, Prem L Bhalla, William M Bonner, W Cande, Brian P Chadwick, Simon W L Chan, George A M Cross, Liwang Cui, Stefan I Dimitrov, Detlef Doenecke, José M Eirin-López, Martin A Gorovsky, Sandra B Hake, Barbara A Hamkalo, Sarah Holec, Steven E Jacobsen, Kinga Kamieniarz, Saadi Khochbin, Andreas G Ladurner, David Landsman, John A Latham, Benjamin Loppin, Harmit S Malik, William F Marzluff, John R Pehrson, Jan Postberg

Cohesin is required for expression of the estrogen receptor-alpha (ESR1) gene

Tanja Prenzel, Frank Kramer, Upasana Bedi, Sankari Nagarajan, Tim Beissbarth, Steven A Johnsen

The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner

Frank Sleutels, Widia Soochit, Marek Bartkuhn, Helen Heath, Sven Dienstbach, Philipp Bergmaier, Vedran Franke, Manuel Rosa-Garrido, Suzanne van de Nobelen, Lisa Caesar, Michael van der Reijden, Jan Bryne, Wilfred van IJcken, J Grootegoed, M Delgado, Boris Lenhard, Rainer Renkawitz, Frank Grosveld, Niels Galjart

Enhancers and silencers: an integrated and simple model for their function

Petros Kolovos, Tobias A Knoch, Frank G Grosveld, Peter R Cook, Argyris Papantonis

Quantitative analysis of polycomb response elements (PREs) at identical genomic locations distinguishes contributions of PRE sequence and genomic environment

Helena Okulski, Birgit Druck, Sheetal Bhalerao, Leonie Ringrose

Heterogeneity in the kinetics of nuclear proteins and trajectories of substructures associated with heterochromatin

Lenka Stixová, Eva Bártová, Pavel Matula, Ond？ej Daněk, Soňa Legartová, Stanislav Kozubek

Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells

Natalia Varlakhanova, Rebecca Cotterman, Keith Bradnam, Ian Korf, Paul S Knoepfler

H3K9me3-binding proteins are dispensable for SETDB1/H3K9me3-dependent retroviral silencing

Irina A Maksakova, Preeti Goyal, J？rn Bullwinkel, Jeremy P Brown, Misha Bilenky, Dixie L Mager, Prim B Singh, Matthew C Lorincz

Extensive epigenetic reprogramming in human somatic tissues between fetus and adult

Ryan KC Yuen, Sarah MA Neumann, Alexandra K Fok, Maria S Pe？aherrera, Deborah E McFadden, Wendy P Robinson, Michael S Kobor

Generation of bivalent chromatin domains during cell fate decisions

Marco De Gobbi, David Garrick, Magnus Lynch, Douglas Vernimmen, Jim R Hughes, Nicolas Goardon, Sidinh Luc, Karen M Lower, Jacqueline A Sloane-Stanley, Cristina Pina, Shamit Soneji, Raffaele Renella, Tariq Enver, Stephen Taylor, Sten Eirik W Jacobsen, Paresh Vyas, Richard J Gibbons, Douglas R Higgs

Proliferating cell nuclear antigen is required for loading of the SMCX/KMD5C histone demethylase onto chromatin

Zhihui Liang, Marc Diamond, Johanna A Smith, Matthias Schnell, René Daniel

The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization

Ryan J Taft, Peter G Hawkins, John S Mattick, Kevin V Morris

Methylation of H2AR29 is a novel repressive PRMT6 target

Tanja Waldmann, Annalisa Izzo, Kinga Kamieniarz, Florian Richter, Christine Vogler, Bettina Sarg, Herbert Lindner, Nicolas L Young, Gerhard Mittler, Benjamin A Garcia, Robert Schneider

Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue

Kathryn Woodfine, Joanna E Huddleston, Adele Murrell

Histone H1 interphase phosphorylation becomes largely established in G1 or early S phase and differs in G1 between T-lymphoblastoid cells and normal T cells

Anna Gréen, Bettina Sarg, Henrik Gréen, Anita L？nn, Herbert H Lindner, Ingemar Rundquist

Enhancer-driven chromatin interactions during development promote escape from silencing by a long non-coding RNA

Lisa Korostowski, Anjali Raval, Gillian Breuer, Nora Engel

Pluripotency factor binding and Tsix expression act synergistically to repress Xist in undifferentiated embryonic stem cells

Tatyana B Nesterova, Claire E Senner, Janina Schneider, Tilly Alcayna-Stevens, Anna Tattermusch, Myriam Hemberger, Neil Brockdorff

Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms

Iris JE Stulemeijer, Brietta L Pike, Alex W Faber, Kitty F Verzijlbergen, Tibor van Welsem, Floor Frederiks, Tineke L Lenstra, Frank CP Holstege, Susan M Gasser, Fred van Leeuwen

Role of the ATPase/helicase maleless (MLE) in the assembly, targeting, spreading and function of the male-specific lethal (MSL) complex of Drosophila

Rosa Morra, Ruth Yokoyama, Huiping Ling, John C Lucchesi

Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies

Ryan KC Yuen, Ruby Jiang, Maria S Pe？aherrera, Deborah E McFadden, Wendy P Robinson

Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells

Lovorka Stojic, Zuzana Jasencakova, Carolina Prezioso, Alexandra Stützer, Beatrice Bodega, Diego Pasini, Rebecca Klingberg, Chiara Mozzetta, Raphael Margueron, Pier Puri, Dirk Schwarzer, Kristian Helin, Wolfgang Fischle, Valerio Orlando

Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene

Brandon J Thomas, Eric D Rubio, Niklas Krumm, Pilib ó Broin, Karol Bomsztyk, Piri Welcsh, John M Greally, Aaron A Golden, Anton Krumm

Correction: Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene

Vinesh Vinayachandran, Rama-Haritha Pusarla, Purnima Bhargava

A proteomic approach for the identification of novel lysine methyltransferase substrates

Dan Levy, Chih Long Liu, Ze Yang, Aaron M Newman, Ash A Alizadeh, Paul J Utz, Or Gozani

Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning

Jonathan I Gent, Kevin L Schneider, Christopher N Topp, Carmen Rodriguez, Gernot G Presting, R Kelly Dawe

Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp1/KMT1D

Thomas Weiss, Sonja Hergeth, Ulrike Zeissler, Annalisa Izzo, Philipp Tropberger, Barry M Zee, Miroslav Dundr, Benjamin A Garcia, Sylvain Daujat, Robert Schneider

MacroH2A subtypes contribute antagonistically to the transcriptional regulation of the ribosomal cistron during seasonal acclimatization of the carp fish

I Araya, G Nardocci, JP Morales, MI Vera, A Molina, M Alvarez

HP1γ function is required for male germ cell survival and spermatogenesis

Jeremy P Brown, J？rn Bullwinkel, Bettina Baron-Lühr, Mustafa Billur, Philipp Schneider, Heinz Winking, Prim B Singh

Menin and RNF20 recruitment is associated with dynamic histone modifications that regulate signal transducer and activator of transcription 1 (STAT1)-activated transcription of the interferon regulatory factor 1 gene (IRF1)

Lauren J Buro, Edmond Chipumuro, Melissa A Henriksen

Trans-generational epigenetic regulation of C. elegans primordial germ cells

Hirofumi Furuhashi, Teruaki Takasaki, Andreas Rechtsteiner, Tengguo Li, Hiroshi Kimura, Paula M Checchi, Susan Strome, William G Kelly

CTCF regulates the local epigenetic state of ribosomal DNA repeats

Suzanne van de Nobelen, Manuel Rosa-Garrido, Joerg Leers, Helen Heath, Widia Soochit, Linda Joosen, Iris Jonkers, Jeroen Demmers, Michael van der Reijden, Verónica Torrano, Frank Grosveld, M Dolores Delgado, Rainer Renkawitz, Niels Galjart, Frank Sleutels

Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation

Y Amy Tang, Derek Huntley, Giovanni Montana, Andrea Cerase, Tatyana B Nesterova, Neil Brockdorff

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