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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Pepsin homologues in bacteria

Neil D Rawlings, Alex Bateman

Relative power and sample size analysis on gene expression profiling data

M van Iterson, PAC 't Hoen, P Pedotti, GJEJ Hooiveld, JT den Dunnen, GJB van Ommen, JM Boer, RX Menezes

Assessing the genomic evidence for conserved transcribed pseudogenes under selection

Amit N Khachane, Paul M Harrison

Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa

Mark W Davey, Neil S Graham, Bartel Vanholme, Rony Swennen, Sean T May, Johan Keulemans

Fibroblasts from patients with Diamond-Blackfan anaemia show abnormal expression of genes involved in protein synthesis, amino acid metabolism and cancer

Federica Avondo, Paola Roncaglia, Nicoletta Crescenzio, Helena Krmac, Emanuela Garelli, Marta Armiraglio, Carlotta Castagnoli, Maria Campagnoli, Ugo Ramenghi, Stefano Gustincich, Claudio Santoro, Irma Dianzani

Identification and characterization of miRNAs expressed in the bovine ovary

Md Hossain, Nasser Ghanem, Michael Hoelker, Franca Rings, Chirawath Phatsara, Ernst Tholen, Karl Schellander, Dawit Tesfaye

Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast

Saumyadipta Pyne, Roee Gutman, Chang Kim, Bruce Futcher

Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia

Eoin P O'Grady, Duber F Viteri, Rebecca J Malott, Pamela A Sokol

Osteopontin: an early innate immune marker of Escherichia coli mastitis harbors genetic polymorphisms with possible links with resistance to mastitis

Karin Alain, Niel A Karrow, Catherine Thibault, Jessika St-Pierre, Martin Lessard, Nathalie Bissonnette

New methods to analyse microarray data that partially lack a reference signal

Neeltje Carpaij, Ad C Fluit, Jodi A Lindsay, Marc JM Bonten, Rob JL Willems

A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)

Rajeev K Varshney, Pavana J Hiremath, Pazhamala Lekha, Junichi Kashiwagi, Jayashree Balaji, Amit A Deokar, Vincent Vadez, Yongli Xiao, Ramamurthy Srinivasan, Pooran M Gaur, Kadambot HM Siddique, Christopher D Town, David A Hoisington

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights

Na Liu, Zhen-Dong Xiao, Chun-Hong Yu, Peng Shao, Yin-Tong Liang, Dao-Gang Guan, Jian-Hua Yang, Chun-Long Chen, Liang-Hu Qu, Hui Zhou

Endogenous control genes in complex vascular tissue samples

Lasse Folkersen, Sanela Kurtovic, Anton Razuvaev, Hanna E Agardh, Anders Gabrielsen, Gabrielle Paulsson-Berne

Evolution of genomic sequence inhomogeneity at mid-range scales

Ashwin Prakash, Samuel S Shepard, Jie He, Benjamin Hart, Miao Chen, Surya P Amarachintha, Olga Mileyeva-Biebesheimer, Jason Bechtel, Alexei Fedorov

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

Rob M de Graaf, Theo A van Alen, Bas E Dutilh, Jan WP Kuiper, Hanneke JAA van Zoggel, Minh Huynh, Hans-Dieter G？rtz, Martijn A Huynen, Johannes HP Hackstein

Comparative analysis of plant genomes allows the definition of the "Phytolongins": a novel non-SNARE longin domain protein family

Marco Vedovato, Valeria Rossi, Joel B Dacks, Francesco Filippini

Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach

Ying Wang, Vinayak Brahmakshatriya, Huifeng Zhu, Blanca Lupiani, Sanjay M Reddy, Byung-Jun Yoon, Preethi H Gunaratne, Jong Kim, Rui Chen, Junjun Wang, Huaijun Zhou

GATA3 is a master regulator of the transcriptional response to low-dose ionizing radiation in human keratinocytes

Florian Bonin, Manuella Molina, Claude Malet, Chantal Ginestet, Odile Berthier-Vergnes, Michèle T Martin, Jér？me Lamartine

Comparative analysis of the mammalian WNT4 promoter

Hongshi Yu, Andrew J Pask, Geoffrey Shaw, Marilyn B Renfree

Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity

Nasheeman Ashraf, Deepali Ghai, Pranjan Barman, Swaraj Basu, Nagaraju Gangisetty, Mihir K Mandal, Niranjan Chakraborty, Asis Datta, Subhra Chakraborty

Sequence features associated with microRNA strand selection in humans and flies

Hai Hu, Zheng Yan, Ying Xu, Hao Hu, Corinna Menzel, Yan Zhou, Wei Chen, Philipp Khaitovich

Genome-wide analysis of Tol2 transposon reintegration in zebrafish

Igor Kondrychyn, Marta Garcia-Lecea, Alexander Emelyanov, Sergey Parinov, Vladimir Korzh

Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits

William Barendse, Blair E Harrison, Rowan J Bunch, Merle B Thomas, Lex B Turner

The components of the Daphnia pulex immune system as revealed by complete genome sequencing

Seanna J McTaggart, Claire Conlon, John K Colbourne, Mark L Blaxter, Tom J Little

ESTPiper – a web-based analysis pipeline for expressed sequence tags

Zuojian Tang, Jeong-Hyeon Choi, Chris Hemmerich, Ankita Sarangi, John K Colbourne, Qunfeng Dong

Comparative metagenomics of Daphnia symbionts

Weihong Qi, Guang Nong, James F Preston, Frida Ben-Ami, Dieter Ebert

QTL global meta-analysis: are trait determining genes clustered?

Hanni Salih, David L Adelson

Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

Sean MacEachern, John McEwan, Alan McCulloch, Andrew Mather, Keith Savin, Mike Goddard

High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs

Nicole AR Walter, Daniel Bottomly, Ted Laderas, Michael A Mooney, Priscila Darakjian, Robert P Searles, Christina A Harrington, Shannon K McWeeney, Robert Hitzemann, Kari J Buck

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)

Bhupendra Chaudhary, Ran Hovav, Lex Flagel, Ron Mittler, Jonathan F Wendel

Relationship between estrogen receptor α location and gene induction reveals the importance of downstream sites and cofactors

Fabio Parisi, Bernhard Sonderegger, Pratyaksha Wirapati, Mauro Delorenzi, Felix Naef

The degree of microbiome complexity influences the epithelial response to infection

Jeffrey J Mans, Kate von Lackum, Cassandra Dorsey, Shaun Willis, Shannon M Wallet, Henry V Baker, Richard J Lamont, Martin Handfield

Effect of CAR activation on selected metabolic pathways in normal and hyperlipidemic mouse livers

Tadeja Re？en, Viola Tamasi, Anita L？vgren-Sandblom, Ingemar Bj？rkhem, Urs A Meyer, Damjana Rozman

What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

David A Rasmussen, Mohamed AF Noor

Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array

Xingyi Hang, Peiyao Li, Zhifeng Li, Wubin Qu, Ying Yu, Hualing Li, Zhiyong Shen, Hao Zheng, Yan Gao, Yonghong Wu, Minghua Deng, Zhixian Sun, Chenggang Zhang

A simple and efficient method for isolating polymorphic microsatellites from cDNA

Gen Yue, Ze Zhu, Chun Wang, Jun Xia

Characterization of the bovine type I IFN locus: rearrangements, expansions, and novel subfamilies

Angela M Walker, R Michael Roberts

Novel transcripts discovered by mining genomic DNA from defined regions of bovine chromosome 6

Rosemarie Weikard, Tom Goldammer, Annett Eberlein, Christa Kuehn

Identification and characterization of new miRNAs cloned from normal mouse mammary gland

Nezha Sdassi, Licia Silveri, Johann Laubier, Ga？lle Tilly, José Costa, Sarah Layani, Jean-Luc Vilotte, Fabienne Le Provost

Histone acetylations mark origins of polycistronic transcription in Leishmania major

Sean Thomas, Amanda Green, Nancy R Sturm, David A Campbell, Peter J Myler

Learning from microarray interlaboratory studies: measures of precision for gene expression

David L Duewer, Wendell D Jones, Laura H Reid, Marc Salit

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Edouard I Severing, Aalt DJ van Dijk, Willem J Stiekema, Roeland CHJ van Ham

The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus

Chuan Ma, Chunxiang Liu, Pengcheng Yang, Le Kang

Gene expression profiling to characterize sediment toxicity – a pilot study using Caenorhabditis elegans whole genome microarrays

Ralph Menzel, Suresh C Swain, Sebastian Hoess, Evelyn Claus, Stefanie Menzel, Christian EW Steinberg, Georg Reifferscheid, Stephen R Stürzenbaum

Evolution of alternative and constitutive regions of mammalian 5'UTRs

Alissa M Resch, Aleksey Y Ogurtsov, Igor B Rogozin, Svetlana A Shabalina, Eugene V Koonin

The ABC transporter gene family of Daphnia pulex

Armin Sturm, Phil Cunningham, Michael Dean

Developmental gene expression profiles of the human pathogen Schistosoma japonicum

Geoffrey N Gobert, Luke Moertel, Paul J Brindley, Donald P McManus

Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae

William J Jo, Jeung Hyoun Kim, Eric Oh, Daniel Jaramillo, Patricia Holman, Alex V Loguinov, Adam P Arkin, Corey Nislow, Guri Giaever, Chris D Vulpe

A robust linkage map of the porcine autosomes based on gene-associated SNPs

Rikke KK Vingborg, Vivi R Gregersen, Bujie Zhan, Frank Panitz, Anette H？j, Kirsten K S？rensen, Lone B Madsen, Knud Larsen, Henrik Hornsh？j, Xuefei Wang, Christian Bendixen

IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes

Wonhoon Lee, Jongsun Park, Jaeyoung Choi, Kyongyong Jung, Bongsoo Park, Donghan Kim, Jaeyoung Lee, Kyohun Ahn, Wonho Song, Seogchan Kang, Yong-Hwan Lee, Seunghwan Lee

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