全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

A Novel Label-Free Fluorescence Strategy Based on Dumbbell Probe for Sensitive Detection of DNA Ligase

DOI: 10.4236/oalib.1107983, PP. 1-9

Subject Areas: Analytical Chemistry

Keywords: Dumbbell Probe, DNA Ligase, SYBR Green I, DNA Ligation Reaction, Exonuclease

Full-Text   Cite this paper   Add to My Lib

Abstract

Based on the principle that DNA ligation reaction mediates hydrolysis of the dumbbell probe (DP), a novel label-free strategy for sensitive detection of DNA ligase was developed. DNA ligase ligated the nick on DP to generate a fully closed dumbbell DNA structure, which could prevent the hydrolysis of exonuclease, after combining with SYBR Green I (SG I), a strong fluorescent signal was obtained. In the absence of DNA ligase, DP was hydrolyzed into single nucleotides by exonuclease, resulting in a rather weak signal. The linear range of this method for detecting T4 DNA ligase is 0.00004 - 0.004 U/μL, and the detection limit is 0.00003 U/μL. The proposed strategy is sensitive, inexpensive and easy to operate, which may offer an effective tool for further applications in new drug screening.

Cite this paper

Zhu, W. , Wang, X. , Dai, L. , Yang, W. , Li, Y. and Liu, R. (2021). A Novel Label-Free Fluorescence Strategy Based on Dumbbell Probe for Sensitive Detection of DNA Ligase. Open Access Library Journal, 8, e7983. doi: http://dx.doi.org/10.4236/oalib.1107983.

References

[1]  Pascal, J.M. (2008) DNA and RNA Ligases: Structural Variations and Shared Mechanisms. Current Opinion in Structural Biology, 18, 96-105. https://doi.org/10.1016/j.sbi.2007.12.008
[2]  Sun, D., Urrabaz, R., Kelly, S., Nguyen, M. and Weitman, S. (2002) Enhancement of DNA Ligase I Level by Gemcitabine in Human Cancer Cells. Clinical Cancer Research, 8, 1189-1195. https://doi.org/10.1093/carcin/23.4.669
[3]  Kuhn, H. and Frank-Kamenetskii, M.D. (2006) Template-Independent Ligation of Single-Stranded DNA by T4 DNA Ligase. The FEBS Journal, 272, 5991-6000. https://doi.org/10.1111/j.1742-4658.2005.04954.x
[4]  He, K.Y., Li, W. and Nie, Z. (2012) Enzyme-Regulated Activation of DNAzyme: A Novel Strategy for a Label-Free Colorimetric DNA Ligase Assay and Ligase-Based Biosensing. Chemistry-A European Journal, 18, 3992-3999. https://doi.org/10.1002/chem.201102290
[5]  Liu, L.F., Tang, Z.W., Wang, K.M. and Tan, W.H. (2005) Using Molecular Beacon to Monitor Activity of E. coli DNA Ligase. Analyst, 130, 350-357. https://doi.org/10.1039/B413959C
[6]  Scott, B., Lavesa-Curto, M., Bullard, D.R., Butt, J.N. and Bowater, R.P. (2006) Immobilized DNA Hairpins for Assay of Sequential Breaking and Joining of DNA Backbones. Analytical Biochemistry, 358, 90-98. https://doi.org/10.1016/j.ab.2006.08.010
[7]  Luan, Q.F., Xue, Y., Yao, X. and Lu, W. (2010) Hairpin DNA Probe Based Surface Plasmon Resonance Biosensor Used for the Activity Assay of E. coli DNA Ligase. Analyst, 135, 414-418. https://doi.org/10.1039/B920228E
[8]  Stejskalová, E., Horáková, P., Vacek, J., Bowater, R.P. and Fojta, M. (2014) Enzyme-Linked Electrochemical DNA Ligation Assay Using Magnetic Beads. Analytical and Bioanalytical Chemistry, 406, 4129-4136. https://doi.org/10.1007/s00216-014-7811-y
[9]  Bruijins, B., Tiggelaar, R. and Gardeniers, H. (2017) Dataset of the Absorption, Emission and Excitation Spectra and Fluorescence Intensity Graphs of Fluorescent Cyanine Dyes for the Quantification of Low Amounts of dsDNA. Data in Brief, 10, 132-143. https://doi.org/10.1016/j.dib.2016.11.090
[10]  Chen, J.Y., Ji, X.H. and He, Z.K. (2017) Smart Composite Reagent Composed of Double-Stranded DNA-Templated Copper Nanoparticle and SYBR Green I for Hydrogen Peroxide Related Biosensing. Analytical Chemistry, 89, 3988-3995. https://doi.org/10.1021/acs.analchem.6b04484
[11]  Sengupta, D. and Sengupta, J. (2016) Application of Graph Entropy in CRISPR and Repeats Detection in DNA Sequences. Computational Molecular Bioscience, 6, 41-51. https://doi.org/10.4236/cmb.2016.63004

Full-Text


comments powered by Disqus

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133

WeChat 1538708413