全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

Using Geometric Morphometrics to Quantify Variation of Shape and Magnitude of the Pattern of Milk Production of Dairy Cattle

DOI: 10.4236/oalib.1102928, PP. 1-19

Subject Areas: Agricultural Science

Keywords: Lactation Curve, Orbital Graph, Geometric Morphometrics, Cardioid Shape, Heart Shape, New Zealand, United States, Time Series Data

Full-Text   Cite this paper   Add to My Lib

Abstract

Magnitude and the production pattern (or shape) of milk produced by dairy cattle are determined by the physiological process of the mammary gland. The production pattern or shape, projected surface on a plane by graphical representation and which can be regarded as a biological form, lacks its appropriate description. We developed the application of the relatively new geometric morphometrics method, which visualizes, measures, and tests differences in the form of biological shapes. We applied the landmark-based geometric morphometrics technique to quantify variation of magnitude and the shape projected on plane by graphical depiction representing the relationship between milk yield and time. We used a free software and small dataset of milk production, monthly time series data from 2007 to 2015, of two leading dairy industries: New Zealand and United States. The results of the analysis showed production patterns of cardioid shape in New Zealand and heart shape in United States. Those forms varied in size and shape within and between countries, and only shape within country were statistically non-significant. The landmark-based geometric morphometric is effective to quantify variation of the shape of the milk production pattern under different setting. This may not only complement the analysis of milk prediction, but also reveal profound information about the biological process represented through the shape, by allowing the control of co-variation with other variables.

Cite this paper

Á, Durón-Benítez, N. A. and Huang, W. (2016). Using Geometric Morphometrics to Quantify Variation of Shape and Magnitude of the Pattern of Milk Production of Dairy Cattle. Open Access Library Journal, 3, e02928. doi: http://dx.doi.org/10.4236/oalib.1102928.

References

[1]  Beever, D.E., et al. (1991) A Review of Empirical and Mechanistic Model of Lactational Performance by the Dairy Cow. Livestock Production Science, 29, 115-130.
http://dx.doi.org/10.1016/0301-6226(91)90061-T
[2]  Dongre, V.B., et al. (2011) A Brift Review on Lactation Curve Models for Predicting Milk Yield and Different Factors Affecting lactation Curve in Dairy Cattle. International Journal of Agriculture: Research and Review, 1, 6-15.
[3]  Kawata, Y. (2011) Lactation Curves of Dairy Animals: An Interim Literature Review. Research Bulletin of Obihiro University, 32, 71-91.
[4]  Macciotta, N.P.P., et al. (2011) The Mathematical Description of Lactation Curves in Dairy Cattle. Italian Journal of Animal Science, 10, 213-223.
http://dx.doi.org/10.4081/ijas.2011.e51
[5]  Leclerc, H., et al. (2008) Environmental Effects on Lactation Curves Included in a Test Day Model Genetic Evaluation. Animal, 2, 344-353.
http://dx.doi.org/10.1017/S175173110700119X
[6]  Rekik, B. and Ben Gara, A. (2004) Factors Affecting the Occurrence of Atypical Lactations for Holstein-Friesian Cows. Livestock Production Science, 87, 245-250.
http://dx.doi.org/10.1016/j.livprodsci.2003.09.023
[7]  Tekerli, M., et al. (2000) Factors Affecting the Shape of Lactation Curves of Holstein Cows from the Balikesir Province of Turkey. Journal of Dairy Science, 83, 1381-1386.
http://dx.doi.org/10.3168/jds.S0022-0302(00)75006-5
[8]  Wilmink, J.B.M. (1987) Adjustment of Test-Day Milk, Fat and Protein Yield for Age, Season and Stage of Lactation. Livestock Production Science, 16, 335-348.
http://dx.doi.org/10.1016/0301-6226(87)90003-0
[9]  Silvestre, A.M., Petim-Batista, F. and Colaco, J. (2006) The Accuracy of Seven Mathematical Functions in Modeling Dairy Cattle Lactation Curves Based on Test-Day Records from Varying Sample Schemes. Journal of Dairy Science, 89, 1813-1821.
http://dx.doi.org/10.3168/jds.S0022-0302(06)72250-0
[10]  Macciotta, N.P.P., et al. (2006) Factors Affecting Individual Lactation Curve Shape in Italian River Buffaloes. Livestock Science, 104, 33-37.
http://dx.doi.org/10.1016/j.livsci.2006.03.001
[11]  Dematawewa, C.M.B. and Berger, P.J. (1998) Genertic and Phenotypic Parameters for 305-Day Yield, Fertility, and Survival in Holsteins. Journal of Dairy Science, 81, 2700-2709.
http://dx.doi.org/10.3168/jds.S0022-0302(98)75827-8
[12]  Macciotta, N.P.P., Vicario, D. and Cappio-Borlino, A. (2005) Detection of Different Shapes of Lactation Curve for Milk Yield in Dairy Cattle by Empirical Mathematical Models. Journal of Dairy Science, 88, 1178-1191. http://dx.doi.org/10.3168/jds.S0022-0302(05)72784-3
[13]  Olori, V.E., et al. (1999) Fit of Standard Models of the Lactation Curve to Weekly Records of Milk Production of Cows in a Single Herd. Livestock Production Science, 58, 55-63.
http://dx.doi.org/10.1016/S0301-6226(98)00194-8
[14]  Cole, J.B., Null, D.J. and VanRaden, P.M. (2009) Best Prediction of Yields for Long Lactations. Journal of Dairy Science, 92, 1796-1810.
http://dx.doi.org/10.3168/jds.2007-0976
[15]  Dematawewa, C.M.B., Pearson, R.E. and VanRaden, P.M. (2007) Modeling Extended Lactation of Holsteins. Journal of Dairy Science, 90, 3924-3936.
http://dx.doi.org/10.3168/jds.2006-790
[16]  Grossman, M. and Koops, W.J. (2003) Modeling Extended Lactation Curves of Dairy Cattle: A Biological Basis for Multiphasic Approach. Journal of Dairy Science, 86, 988-998.
http://dx.doi.org/10.3168/jds.S0022-0302(03)73682-0
[17]  Pollott, G.E. (2011) Short Communication: Do Holstein Lactations of Varied Lengths Have Different Characteristics? Journal of Dairy Science, 94, 6173-6180.
http://dx.doi.org/10.3168/jds.2011-4467
[18]  Ehrlich, J.L. (2011) Quantifying Shape of Lactation Curves, and Benchmark Curves for Common Dairy Breeds and Parities. Bovine Practitioner, 45, 88-96.
[19]  Ehrlich, J.L. (2013) Quantifying Inter-Group Variability in Lactation Curve Shape and Magnitude with the Milkbot Lactation Model. PeerJ, 1, e54.
http://dx.doi.org/10.7717/peerj.54
[20]  Capuco, A.V., Wood, D.L., Baldwin, R., Mcleod, K. and Paape, M.J. (2001) Mammary Cell Number, Proliferation, and Apoptosis during a Bovine Lactation: Relation Milk Production and Effect of bST. Journal of Dairy Science, 84, 2177-2187.
http://dx.doi.org/10.3168/jds.S0022-0302(01)74664-4
[21]  Webster, M. and Sheets, A.D. (2010) A Practical Introduction to Landmark-Based Geometric Morphometrics. Quantitative Methods in Paleobioogy, 16, 163-188.
[22]  Adams, D.C., Rohlf, F.J. and Slice, D.E. (2004) Geometric Morphometrics: Ten Years of Progress Following the “Revolution”. Italian Journal of Zoology, 71, 5-16.
http://dx.doi.org/10.1080/11250000409356545
[23]  Bookstein, F.L. (1991) Morphometric Tools for Landmark Data Geometric and Biology. Cambrige University, Cambrige.
[24]  Cooke, S.B. and Terhune, C.E. (2015) Form, Function, and Geometric Morphometrics. The Anatomical Record, 298, 5-28.
http://dx.doi.org/10.1002/ar.23065
[25]  Viscosi, V. and Cardini, A. (2011) Leaf Morphology, Taxonomy and Geometric Morphometrics: A Simple Protocol for Begginners. PLoS ONE, 6, e25630.
http://dx.doi.org/10.1371/journal.pone.0025630
[26]  Kirkpatrick, A. and Lofsvold, D. (1989) The Evolution of Growth Trajectories and Other Quantitative Characters. Genome, 31, 778-783.
http://dx.doi.org/10.1139/g89-137
[27]  Kirkpatrick, M. (1997) Genetic Improvement of Livestock Growth Using Infinite-Dimen- tional Analysis. Animal Biotechnology, 8, 55-61.
http://dx.doi.org/10.1080/10495399709525867
[28]  Kirkpatrick, M., Hill, W.G. and Thomson, R. (1994) Estimating the Covariance Structure of Traits during Growth and Aging, Illustrated with Lactation in Dairy Cattle. Genetical Research, 64, 57-69. http://dx.doi.org/10.1017/S0016672300032559
[29]  Kirkpatrick, M., Lofsvold, D. and Bulmer, M. (1990) Analysis of the Inheritance, Selection and Evolution of Growth Trajectores. Genetics, 124, 979-993.
[30]  Murphy, M.D., O’Mahony, M.J., Shalloo, L., French, P. and Upton, J. (2014) Comparison of Modelling Technique for Milk-Production Forecasting. Journal of Dairy Science, 97, 3352- 3363. http://dx.doi.org/10.3168/jds.2013-7451
[31]  Dairy Companies Association of New Zealand (DCANZ) (2015) New Zealand Milk Production 2007-2014. Dairy Companies Association of New Zealand.
[32]  United Stated Department of Agriculture (USDA) (2015) Milk Production from 2007-2014. National Agricultural Statistics Service.
[33]  Garcia, S.C. and Holmes, C.W. (1999) Effects of Time of Calving on the Productivity of Pastures-Based Dairy Systems: A Review. New Zealand Journal of Agricultural Research, 42, 347-362. http://dx.doi.org/10.1080/00288233.1999.9513384
[34]  Kaiser, H.M., Oltenacu, P.A. and Smith, T.R. (1988) The Effect of Alternative Seasonal Price Differentials on Milk Production in New York. Northeastern Journal of Agricultural and Resource Economics, 17, 46-55.
[35]  Sun, C.-H., Kaiser, H.M. and Forker, O.D. (1995) Analysis of Seasonal Milk Price Incentive Plan. Review of Agricultural Economics, 17, 383-393.
http://dx.doi.org/10.2307/1349581
[36]  DairyNZ (2015) New Zealand Dairy Statistics.
http://www.dairynz.co.nz/TagListing/Index?tag=dairy%20industry%20statistics
[37]  Bookstein, F.L. (Ed.) (1978) The Measurement of Biological Shapes and Shape Changes. Springer-Verlag, Berlin.
[38]  Mitteroecker, P., Gunz, P., Windhager, S. and Schaefer, K. (2013) A Brift Review of Shape, Form, and Allometry in Geometric Morphometrics, with Application to Human Facil Morphology. Hystrix: The Italian Journal of Mammology, 24, 59-66.
[39]  Klingenberg, C.P. (2011) MorphoJ: An Integrated Software Package for Geometric Morphometrics. Molecular Ecology Resources, 11, 353-357.
http://dx.doi.org/10.1111/j.1755-0998.2010.02924.x
[40]  O’Higgins, P. and Jones, N. (1998) Facial Growth in Cercocebus torquatus: An Application of Three Dimensional Geometric Morphometric Techniues to the Study of Morphological Variation. Journal of Anatomy, 193, 251-272.
http://dx.doi.org/10.1046/j.1469-7580.1998.19320251.x
[41]  Hammer, O. (2015) PAST.
http://folk.uio.no/ohammer/past
[42]  Adams, D.C., Otarola-Castillo, E. and Sherratt, E. (2015) Geomorph: Software for Geometric Morphometric Analyses of 2D/3D Landmarks Data.
http://cran.r-project.org/web/packages/geomorph/
[43]  Zelditch, M.L., Swiderski, D.L. and Sheets, H.D. (Eds.) (2004) Geometric Morphometrics of Biologists: A Primer. 2nd Edition, Elsevier Academic Press, San Diego, 443.
[44]  Goodall, C. (1991) Procrustest Methods in the Statistical Analysis of Shape. Journal of the Royal Statistical Society, 53, 285-339.
[45]  Zaiontz, C. (2015) The Data Analysis for This Paper Was Generated Using the Real Statistic Resource Pack Software.
www.real-statistics.com
[46]  Klingenberg, C.P., Barluenga, M. and Meyer, A. (2002) Shape Analysis of Symmetric Structure: Quantifying Variation among Individuals and Asymmetry. Evolution, 56, 1909- 1920. http://dx.doi.org/10.1111/j.0014-3820.2002.tb00117.x

Full-Text


Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133