A hallmark of bacterial populations cultured in vitro is their homogeneity of growth, where the majority of cells display identical growth rate, cell size and content. Recent insights, however, have revealed that even cells growing in exponential growth phase can be heterogeneous with respect to variables typically used to measure cell growth. Bacterial heterogeneity has important implications for how bacteria respond to environmental stresses, such as antibiotics. The phenomenon of antimicrobia...

Ecology  Developmental Biology  Agricultural Engineering  Environmental Sciences  Artificial Intelligence  Biological Engineering  Genomics  Chemical Engineering & Technology  Genetics  Food Science & Technology  Diagnostics  Biological Materials  Electric Engineering  Genetic Engineering  Industrial Engineering  Computer Engineering  Health Policy  Biochemistry  Biodiversity  Bioengineering  Bioinformatics  Biophysics  Biotechnology  Computational Biology  Cell Biology  Infectious Diseases  Immunology  Internal Medicine  Metabolic Sciences  Medical Genetics  Allergy & Clinical Immunology  Zoology  Biological Chemistry  Applied Physics  Taxonomy  Medicinal Chemistry  Agricultural Science  Analytical Chemistry  Mycology  Public Health  Mathematical Biology  Marine Biology  Molecular Biology  Microbiology  Global Health  Parasitology  Plant Science  Translational Medicine  Soil Science  Synthetic Biology  Materials Engineering 

Doi:10.1016/j.ohx.2021.e00249

Population-scale and rapid testing for SARS-CoV-2 continues to be a priority for several parts of the world. We revisit the in vitro technology platforms for COVID-19 testing and diagnostics—molecular tests and rapid antigen tests, serology or antibody tests, and tests for the management of COVID-19 patients. Within each category of tests, we review the commercialized testing platforms, their analyzing systems, specimen collection protocols, testing methodologies, supply chain logistics, and rel...

Allergy & Clinical Immunology  Electrochemistry  Information Technologies  Medical Education  Biological Chemistry  Virology  Medicinal Chemistry  Developmental Biology  Environmental Sciences  Biological Engineering  Genomics  Genetics  Food Science & Technology  Marketing  Oncology  Technology And Innovation  Theoretical Chemistry  Diagnostics  Supply Chain Management  Biological Materials  Nanometer Materials  Drugs & Devices  Public Health  Organic Chemistry  Epidemiology  Sales Management  Molecular Biology  Health Policy  Microbiology  Global Health  Bioengineering  Physical Chemistry  Bioinformatics  Biotechnology  Functional Materials  Computational Biology  Cell Biology  Parasitology  Translational Medicine  Infectious Diseases  Women’s Health  Immunology  Respiratory Medicine  Materials Engineering  Internal Medicine  Metabolic Sciences  Medical Genetics 

Doi:10.3390/s21196581

This study is intended to examine the growing phases and the harvest of sugarcane crops. The growing phases is analyzed with remote sensing approaches. The remote sensing data employed is Landsat 8. The vegetation indices of Normalized Difference Vegetation Index (NDVI) and Enhanced Normalized Difference Vegetation Index (ENDVI) are employed to analyze the growing phases and the harvest of sugarcane crops. Field survey was conducted in March and August 2017. The research results shows that March...

Agricultural Science  Computational Biology  Plant Science 

Doi:10.4308/hjb.26.3.117

Given a large number of birds in the flock, we mathematically investigate the mechanism the birds move in a collective behavior. We assume that each bird is able to know its position and velocity of other birds within a radius of communication. Thus, to be able to fly in the flock, a bird has to adjust its position and velocity according to his neighbors. For this purpose, first of all, we analyze how the connectedness of the bird interaction network affects the cohesion of the stable bird flock...

Animal Behavior  Zoology  Computational Biology 

Doi:10.4308/hjb.26.4.179

The 3D city/landscape model is digital representation of real environment that can be used for planner or landscape architecture in urban development planning. That model’s more focused on building, whereas vegetation model’s also needed for urban planning simulation. This research purposes are to map existing vegetation and to generate individual trees model in some level of details. The research area is campus of ITB Jatinangor and the used data are orthophoto and DSM from UAV-Photogrammetry t...

Computational Biology  Ecology  Environmental Sciences 

Doi:10.4308/hjb.26.4.185

The goal of the study was to ascertain sperm proteins as fertility markers in Angus bull sperm using proteomics and validating the markers through comparative sperm biology between Angus and Holstein bulls for which there are reliable fertility data available. We aimed to determine proteins differentially expressed in sperm from Angus bulls with different fertility phenotypes. Two-dimensional differential gel electrophoresis with mass-spectrometry, functional gene clusters, canonical pathways an...

Zoology  Computational Biology  Developmental Biology 

Doi:10.4308/hjb.27.2.116

Dengue fever is caused by the mosquito-borne virus termed (DENV). However, DENV-2 has been identified as the most prevalent amongst the Indonesian pediatric urban population, in contrast with the other four serotypes. Therefore, it is important to reduce severe infection risk by adopting preventive measures, including through vaccine development. The aim of this study, therefore is to use various in silico tools in the design of epitope-based peptide vaccines (T-cell and B-cell types), based on...

Virology  Biotechnology  Genetics  Computational Biology  Microbiology 

Doi:10.4308/hjb.27.3.228

Environmental ergonomics in bioproduction of food Small Medium-sized Enterprises (SMEs) become a concern and need to be optimized. An optimization model was developed using a Genetic Algorithm (GA). The weight of an Artificial Neural Network Model was used as a fitness function for GA. The research objectives were: 1) To design an environmental ergonomic assessment system for bioproduction of Food SMEs, 2) To develop an optimization model for environmental ergonomic assessment using a Genetic Al...

Computational Biology  Environmental Sciences 

Doi:10.4308/hjb.27.4.296

Landscape architecture affected by interaction between built and natural environment such as vegetation. Nowadays, landscape architects are using 3D city models for simulations, which requires highly dynamic and time-varying attributes. 3D city modelling structure has been standardized by CityGML, although researches that are related to the storing of dynamic data had been conducted for the past years, it has not been supported by any standard until this very moment. In dynamizer, it is added as...

Computational Biology  Ecology  Ecosystem Science 

Doi:10.4308/hjb.27.4.314

Lettuce cultivations in tropical areas are often performed in open field of highlands. Such cultivation practices are often followed by soil erosion. To reduce soil erosion, it is important to shift lettuce cultivation areas to lowlands and to utilize hydroponic system. In such a hydroponic system, photosynthetic rate of the lettuce plants should be evaluated in order to formulate its relation with the cultivation conditions. This study aimed to evaluate the photosynthetic rate of lettuce plants...

Computational Biology  Plant Science 

Doi:10.4308/hjb.27.1.31