[1] | [2]杨春亮,王良,武斌,等.大豆GmRAV基因的密码子偏好性分析[J].东北农业大学学报,2012,43(7):34-41.(Yang C L,Wang L,Wu B,et al.Codon bias analysis of soybean GmRAV-gene[J].Journal of Northeast Agricultural University,2012,43(7):34-41.)
|
[2] | [3]武志娟,钟金城.密码子偏性及其应用[J].生物学通报,2012,47(4):9-11.(Wu Z J,Zhong J C.Codon bias and application[J].Bulletin of Biology,2012,47(4):9-11.)
|
[3] | [4]续晨,蔡小宁,钱保俐,等.葡萄基因组密码子使用偏好模式研究[J].西北植物学报,2012,32(2):409-415.(Xu C,Cai X N,Qian B L,et al.Codon usage bias in Vitisvinifera[J].Acta Botanica Boreali-Occidentalia Sinica,2012,32(2):409-415.)
|
[4] | [5]Sharp P M,Li W H.An evolutionary perspective on synonymous codon usage in unicellular organisms[J].Journal of Molecular Evolution,1986,24:28-38.
|
[5] | [6]Wright F.The‘effective number of codons’used in a gene[J].Gene,1990,87:23-29.
|
[6] | [7]Sueoka N.Directional mutation pressure and neutral molecular evolution[J].Proceedings of the National Academy of Sciences,1988,85(8):2653-2657.
|
[7] | [8]Sueoka N.Two aspects of DNA base composition:G+C content and translation?coupled deviation from intra-strand rule of A=T and G=C[J]. Journal of Molecular Evolution,1999,49(1):49-62.
|
[8] | [9]邢朝斌,吴鹏,修乐山,等.刺五加功能基因密码子偏好性的分析[J].中草药,2013,44(5):598-603.(Xin C B,Wu P,Xiu L S,et al.Analysis on bias of functional gene codon of Eleutherococcus senticosus[J].Chinese Traditional and Herbal Drugs,2013,44(5):598-603.)
|
[9] | [10]Sharp M,Li W H.The codon adaptation index a measure of directional synonymous codon usage bias,and its potential applications[J].Nucleic Acids Research,1987,15(3):1281-1295.
|
[10] | [11]徐晓忠,刘庆坡,樊龙江,等.双生病毒的同义密码子用法及其进化分析[J].植物病理学报,2008,38(5):478-488.(Xu X Z,Liu Q P,Fan L J,et al.Analysis on synonymous codon usage and evolution in geminiviruses[J].Acta Phytopathologica Sinica,2008,38(5):478-488.)
|
[11] | [12]张文娟.基于密码子水平的生物信息学分析及进化研究[D].上海:复旦大学,2006:37-47.(Zhang W J.Codon analysis and its application in bioinformatics and evolutionary studies[D].Shanghai:Fudan University,2006:37-47.)
|
[12] | [13]周?,陈洪俊,李明福,等.基于相对密码子频率的芜菁花叶病毒基因组序列的进化分析[J].生物信息学,2010,8(2):142-149.(Zhou Y,Chen H J,Li M F,et al.Evolutionary analysis of turnip mosaic virus genomic sequences based on synonymous codon usage[J].China Journal of Bioinformation,2010,8(2):142-149.)
|
[13] | [14]何闪,张淑杰,修乐山,等.鲨烯合酶基因的密码子偏性分析[J].基因组学与应用生物学,2013,32(2):232-239.(He S,Zhang S J,Xiu L S,et al.Codon usage analysis in squalene synthase gene[J].Genomics and Applied Biology,2013,32(2):232-239.)
|
[14] | [15]晁岳恩,常阳,王美芳,等.7种作物叶绿体基因的密码子偏好性及聚类分析[J].华北农学报,2012,27(4):60-64.(Chao Y E,Chang Y,Wang M F,et al.Codon usage bias and cluster analysis on chloroplastic genes from seven crop species[J].Acta Agriculturae Boreali-Sinica,2012,27(4):60-64.)
|
[15] | [16]杨丽,郭万柱,殷华平,等.伪狂犬病病毒基因组密码子用法特点分析[J].中国预防兽医学报,2007,29(2):103-106.(Yang L,Guo W Z,Yin H P,et al.Analysis of characteristic codon usage in pseudorabies virus genome[J].Chinese Journal of Preventive Veterinary Medicine,2007,29(2):103-106.)
|
[16] | [17]章红运.大豆花叶病毒基因组全序列测定及大豆eIF4E和eIFiso4E-基因与病毒VPg基因的互作分析[D].南京:南京农业大学,2012:28-32.(Zhang H Y.Determination of complete genomic of soybean mosaic virus and interaction analysis between soybean eIF4E/eIFiso4E gene and SMV VPg gene[D].Nanjing:Nanjing Agricultural University,2012:28-32.)
|
[17] | [18]Seo J K,Ohshima K,Lee H G,et al.Molecular variability and genetic structure of the population of soybean mosaic virus based on the analysis of complete genome sequences[J].Virology,2009,393(1):91-103.
|
[18] | [19]Chare1 E R,Holmes E C.Aphylogenetic survey of recombination frequency in plant RNA viruses[J].Archives of Virology,2006,151:933-946.
|
[19] | [20]Valli A,Martinn-Hernandez A M,Lo pez-Moya J J,et al.RNA silencing suppression by a second copy of the P1 serine protease of Cucumber vein yellowing ipomovirus(CVYV),a member of the family Potyviridae that lacks the cysteine protease HC-Pro[J].Journal of Virology,2006,80,10055-10063.
|
[20] | [21]Choi B K,Koo J M,Ahn H J,et al.Emergence of Rsv-resistance breaking soybean mosaic virus isolates from Korean soybean cultivars[J].Virus Research,2005,112:42-51.
|
[21] | [22]Acosta-Leal R,Bryan B K,Rush C M.Host effect on the genetic diversification of beet necrotic yellow vein virus single-plant populations[J].Phytopathology,2010,100:1204-1212.
|
[22] | [23]Padidam M,Sawyer S,Fauquet C M.Possible emergence of new geminiviruses by frequent recombination[J].Virology,1999,265:218-255.
|
[23] | [24]MacFarlane S.Natural recombination among plant virus genomes:evidence from-tobraviruses[J].Seminars in Virology,1997,8:25-31.?
|
[24] | [25]Yang Y Q,Lin J,Zheng G J,et al.Recombinant soybean mosaic virus is prevalent in Chinese soybean fields[J].Archives of Virology,2014,159:1793-1796.
|
[25] | [1]Chung B Y W,Miller W A,Atkins J F,et al.An overlapping essential gene in the Potyviridae[J].Proceedings of the National Academy of Sciences of the United States of America,2008,105(15):5897-5902.
|