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Free Tools and Strategies for the Generation of 3D Finite Element Meshes: Modeling of the Cardiac Structures

DOI: 10.1155/2013/540571

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Abstract:

The Finite Element Method is a well-known technique, being extensively applied in different areas. Studies using the Finite Element Method (FEM) are targeted to improve cardiac ablation procedures. For such simulations, the finite element meshes should consider the size and histological features of the target structures. However, it is possible to verify that some methods or tools used to generate meshes of human body structures are still limited, due to nondetailed models, nontrivial preprocessing, or mainly limitation in the use condition. In this paper, alternatives are demonstrated to solid modeling and automatic generation of highly refined tetrahedral meshes, with quality compatible with other studies focused on mesh generation. The innovations presented here are strategies to integrate Open Source Software (OSS). The chosen techniques and strategies are presented and discussed, considering cardiac structures as a first application context. 1. Introduction The increased use of minimally invasive surgical procedures in medicine is a reality, with applications in different specialties. The small incisions ensure the patient smaller exposure to infections, as well as a quicker recovery. The radiofrequency cardiac ablation is a good example of it, being extensively used for over 10 years in the treatment of tachycardia, atrial fibrillation, and atrial flutter [1–4]. This technique is not free from complications, although it has advanced in the last decade. The esophageal injury is a common damage, characterized by the union of tissues from the left atrium and esophagus, through necrosis [1, 4]. The consequence for the patient is death caused by internal bleeding, as blood is diverted directly to the stomach, when it is not noticed by the physician. In the literature, studies using the Finite Element Method (FEM) are targeted to improve cardiac ablation procedure and reduce possible complications, such as esophageal injury. It is possible to highlight that the nucleus of the problem is monitoring the temperatures in the tissues involved more accurately. This approach is not simple, and the computational simulation using FEM has contributed significantly to the improvement of this technique [5–12]. For such simulations, the finite element meshes should consider the size and histological features of the target structures. Furthermore, the quality of the meshes is another fundamental property to properly simulate the desired phenomena. The techniques which are able to generate meshes with such characteristics are preferred, and when they are generated

References

[1]  E. Sosa and M. Scanavacca, “Left atrial-esophageal fistula complicating radiofrequency catheter ablation of atrial fibrillation,” Journal of Cardiovascular Electrophysiology, vol. 16, no. 3, pp. 249–250, 2005.
[2]  S. Nath, C. Lynch, J. G. Whayne, and D. E. Haines, “Cellular electrophysiological effects of hyperthermia on isolated guinea pig papillary muscle: Implications for catheter ablation,” Circulation, vol. 88, no. 4, pp. 1826–1831, 1993.
[3]  O. J. Eick and D. Bierbaum, “Tissue temperature-controlled radiofrequency ablation,” Pacing and Clinical Electrophysiology, vol. 26, no. 3, pp. 725–730, 2003.
[4]  M. O. Siegel, D. M. Parenti, and G. L. Simon, “Atrial-esophageal fistula after atrial radiofrequency catheter ablation,” Clinical Infectious Diseases, vol. 51, no. 1, pp. 73–76, 2010.
[5]  D. Panescu, J. G. Whayne, S. D. Fleischman, M. S. Mirotznik, D. K. Swanson, and J. G. Webster, “Three-dimensional finite element analysis of current density and temperature distributions during radio-frequency ablation,” IEEE Transactions on Biomedical Engineering, vol. 42, no. 9, pp. 879–890, 1995.
[6]  S. Tungjitkusolmun, E. J. Woo, H. Cao, J. Z. Tsai, V. R. Vorperian, and J. G. Webster, “Finite element analyses of uniform current density electrodes for radio-frequency cardiac ablation,” IEEE Transactions on Biomedical Engineering, vol. 47, no. 1, pp. 32–40, 2000.
[7]  H. Cao, M. A. Speidel, J. Z. Tsai, M. S. Van Lysel, V. R. Vorperian, and J. G. Webster, “FEM analysis of predicting electrode-myocardium contact from RF cardiac catheter ablation system impedance,” IEEE Transactions on Biomedical Engineering, vol. 49, no. 6, pp. 520–526, 2002.
[8]  D. Haemmerich and J. G. Webster, “Automatic control of finite element models for temperature-controlled radiofrequency ablation,” BioMedical Engineering Online, vol. 4, article 42, 2005.
[9]  E. J. Berjano, “Theoretical modeling for radiofrequency ablation: state-of-the-art and challenges for the future,” BioMedical Engineering Online, vol. 5, article 24, 2006.
[10]  F. Hornero and E. J. Berjano, “Esophageal temperature during radiofrequency-catheter ablation of left atrium: a three-dimensional computer modeling study,” Journal of Cardiovascular Electrophysiology, vol. 17, no. 4, pp. 405–410, 2006.
[11]  R. Barauskas, A. Gulbinas, and G. Barauskas, “Investigation of radiofrequency ablation process in liver tissue by finite element modeling and experiment,” Medicina (Kaunas, Lithuania), vol. 43, no. 4, pp. 310–325, 2007.
[12]  W. Yang, T. C. Fung, K. S. Chian, and C. K. Chong, “Finite element simulation of food transport through the esophageal body,” World Journal of Gastroenterology, vol. 13, no. 9, pp. 1352–1359, 2007.
[13]  S. F. Miller, J. D. Geiger, and A. J. Shih, “Thermal-electric finite element analysis and experimental validation of bipolar electrosurgical cautery,” Ann Arbor, vol. 1001, Article ID 48109, 2008.
[14]  C. Brock, R. E. Lontis, F. H. Lundager, P. Kunwald, A. M. Drewes, and H. Gregersen, “Model for electrical field distribution in the human esophagus during stimulation with patch and ring electrodes,” Gastroenterology Research and Practice, vol. 2011, Article ID 562592, 8 pages, 2011.
[15]  S. T. Wall, J. M. Guccione, M. B. Ratcliffe, and J. S. Sundnes, “Electromechanical feedback with reduced cellular connectivity alters electrical activity in an infarct injured left ventricle: a finite element model study,” American Journal of Physiology—Heart and Circulatory Physiology, vol. 302, no. 1, pp. H206–H214, 2012.
[16]  D. Milasinovic, M. Ivanovic, H. Tengg-Kobligk, D. Bockler, and N. Filipovic, “Software tools for generating cfd simulation models of blood ow from ct images, and for postprocessing,” Journal of the Serbian Society for Computational Mechanics, vol. 2, no. 2, pp. 51–58, 2008.
[17]  O. Ecabert, J. Peters, M. J. Walker et al., “Segmentation of the heart and great vessels in ct images using a model-based adaptation framework,” Medical Image Analysis, vol. 15, no. 6, pp. 863–876, 2011.
[18]  Z. Sun and T. Chaichana, “Fenestrated stent graft repair of abdominal aortic aneurysm: hemodynamic analysis of the effect of fenestrated stents on the renal arteries,” Korean Journal of Radiology, vol. 11, no. 1, pp. 95–106, 2010.
[19]  D. Richens, M. Field, S. Hashim, M. Neale, and C. Oakley, “A finite element model of blunt traumatic aortic rupture,” European Journal of Cardio-thoracic Surgery, vol. 25, no. 6, pp. 1039–1047, 2004.
[20]  O. Foundation, Openfoam, January 2012, http://www.openfoam.org/.
[21]  “Engrid—open-source mesh generation,” January 2012, http://engits.eu/en/engrid.
[22]  C. Geuzaine and J. F. Remacle, “Gmsh: A 3-D finite element mesh generator with built-in pre- and post-processing facilities,” International Journal for Numerical Methods in Engineering, vol. 79, no. 11, pp. 1309–1331, 2009.
[23]  M. Botsch, S. Steinberg, S. Bischoff, and L. Kobbelt, “Openmesh-a generic and efficient polygon mesh data structure,” in Proceedings of the OpenSG Symposium, 2002.
[24]  Blender, Blender foundation, December 2011, http://www.blender.org/.
[25]  H. Si, TetGen, A Quality Tetrahedral Mesh Generator and Threedimensional Delaunay Triangulator, Weierstrass Institute for Applied Analysis and Stochastic, Berlin, Germany, 2011.
[26]  D. Gerrits, R. Gabriels, and P. Kooijmans, “A survey of mesh generation techniques,” Tech. Rep., Department of Mathematics & Computer Science Technische, Universiteit Eindhoven, 2006.
[27]  R. O. Bonow, D. L. Mann, D. P. Zipes, and P. Libby, Braunwald's Heart Disease: A Textbook of Cardiovascular Medicine, 2-Volume Set, Saunders, 2011.
[28]  “Echocardiography in icu—left atrium dimensions,” June 2012, https://www.stanford.edu/group/ccm_echocardio/cgi-bin/mediawiki/index.php/Left_atrium_dimensions.
[29]  L. G. Rudski, W. W. Lai, J. Afilalo et al., “Guidelines for the Echocardiographic Assessment of the Right Heart in Adults: A Report from the American Society of Echocardiography. Endorsed by the European Association of Echocardiography, a registered branch of the European Society of Cardiology, and the Canadian Society of Echocardiography,” Journal of the American Society of Echocardiography, vol. 23, no. 7, pp. 685–713, 2010.
[30]  M. Lizier, J. Shepherd, L. Nonato, J. Comba, and C. Silva, “Comparing techniques for tetrahedral mesh generation,” in Proceedings of the Inaugural International Conference of the Engineering Mechanics Institute, 2008.
[31]  K. Ho-Le, “Finite element mesh generation methods: a review and classification,” Computer-Aided Design, vol. 20, no. 1, pp. 27–38, 1988.
[32]  D. Pedroso, Tetgen export, March 2007, http://cvs.savannah.gnu.org/viewvc/*checkout*/mechsys/mechsys/src/py_scripts/blender/tetgen_export.py.
[33]  J. Wang and Z. Yu, “Feature-sensitive tetrahedral mesh generation with guaranteed quality,” Computer-Aided Design, vol. 44, no. 5, pp. 400–412, 2012.
[34]  F. Labelle and J. R. Shewchuk, “Isosurface stuffing: fast tetrahedral meshes with good dihedral angles,” ACM Transactions on Graphics, vol. 26, no. 3, Article ID 1276448, 2007.
[35]  P. M. Knupp, “Algebraic mesh quality metrics,” SIAM Journal on Scientific Computing, vol. 23, no. 1, pp. 193–218, 2002.

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