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OALib Journal期刊
ISSN: 2333-9721
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Construction and analysis of a metagenomic library from Tengchong hot spring soil in Yunnan Province
云南腾冲热泉土壤微生物基因组文库的构建与分析

Keywords: Culture-independent method,Uncultured microorganism,Metagenomic library
免培养技术
,未培养微生物,环境基因组文库

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Abstract:

By a combination of freezing/thawing/ proteinase K-based method and SDS/high-salt/heating treatment, the mixed environmental genomic DNA was isolated directly from a hot spring soil in Tengchong, Yunnan, China. With this method, The DNA yield was up to 1 - 2 microg/g soil. After purification with the Wizard DNA clean up system (Promega, Madison, Wis), the mixed genomic DNA was partially digested with restriction enzyme Pst I. Digested DNA fragments of 3 - 8 kb were recovered from agrose gel and ligated to the pSK (+) vector. The ligation mixture was transformed into DH10B strain, resulting in the construction of a metagenomic library with about 2.5 x 10(4) clones. Restriction enzyme analysis revealed that the average insert is about 4.6 kb. Some novel sequences were identified via sequencing and gene annotation analysis of 30 clones randomly chosen from this library.

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