BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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The dystrotelin, dystrophin and dystrobrevin superfamily: new paralogues and old isoforms

Hong Jin, Sipin Tan, Jane Hermanowski, Sabrina B？hm, Sabrina Pacheco, Joanna M McCauley, Marc J Greener, Yaniv Hinits, Simon M Hughes, Paul T Sharpe, Roland G Roberts

Genotypic variation in genome-wide transcription profiles induced by insect feeding: Brassica oleracea – Pieris rapae interactions

Colette Broekgaarden, Erik H Poelman, Greet Steenhuis, Roeland E Voorrips, Marcel Dicke, Ben Vosman

Expression profiling in vivo demonstrates rapid changes in lung microRNA levels following lipopolysaccharide-induced inflammation but not in the anti-inflammatory action of glucocorticoids

Sterghios A Moschos, Andrew E Williams, Mark M Perry, Mark A Birrell, Maria G Belvisi, Mark A Lindsay

EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species

Xin Zhou, Zhen Su

Template switching can create complex LTR retrotransposon insertions in Triticeae genomes

Fran？ois Sabot, Alan H Schulman

A complete mitochondrial genome sequence of the wild two-humped camel (Camelus bactrianus ferus): an evolutionary history of camelidae

Peng Cui, Rimutu Ji, Feng Ding, Dan Qi, Hongwei Gao, He Meng, Jun Yu, Songnian Hu, Heping Zhang

Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes

Christian Weile, Paul P Gardner, Mads M Hedegaard, Jeppe Vinther

Effect of active smoking on the human bronchial epithelium transcriptome

Raj Chari, Kim M Lonergan, Raymond T Ng, Calum MacAulay, Wan L Lam, Stephen Lam

Genomewide high-density SNP linkage analysis of non-BRCA1/2 breast cancer families identifies various candidate regions and has greater power than microsatellite studies

Anna Gonzalez-Neira, Juan Rosa-Rosa, Ana Osorio, Emilio Gonzalez, Melissa Southey, Olga Sinilnikova, Henry Lynch, Rogier A Oldenburg, Christi J van Asperen, Nicoline Hoogerbrugge, Guillermo Pita, Peter Devilee, David Goldgar, Javier Benitez

Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

Penny Nymark, Pamela M Lindholm, Mikko V Korpela, Leo Lahti, Salla Ruosaari, Samuel Kaski, Jaakko Hollmén, Sisko Anttila, Vuokko L Kinnula, Sakari Knuutila

Target genes of myostatin loss-of-function in muscles of late bovine fetuses

Isabelle Cassar-Malek, Florent Passelaigue, Carine Bernard, Jean Léger, Jean-Fran？ois Hocquette

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress

Rita Arora, Pinky Agarwal, Swatismita Ray, Ashok Singh, Vijay Singh, Akhilesh K Tyagi, Sanjay Kapoor

Incorporation of genetic model parameters for cost-effective designs of genetic association studies using DNA pooling

Fei Ji, Stephen J Finch, Chad Haynes, Nancy R Mendell, Derek Gordon

Whole genome expression profiling reveals a significant role for immune function in human abdominal aortic aneurysms

Guy M Lenk, Gerard Tromp, Shantel Weinsheimer, Zoran Gatalica, Ramon Berguer, Helena Kuivaniemi

Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria

Mart Krupovi？, Dennis H Bamford

Human sterile alpha motif domain 9, a novel gene identified as down-regulated in aggressive fibromatosis, is absent in the mouse

Catherine F Li, Jeffrey R MacDonald, Robert Y Wei, Jocelyn Ray, Kimberly Lau, Christopher Kandel, Rachel Koffman, Sherilyn Bell, Stephen W Scherer, Benjamin A Alman

Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

Beile Gao, Radhey S Gupta

The 10 sea urchin receptor for egg jelly proteins (SpREJ) are members of the polycystic kidney disease-1 (PKD1) family

H Jayantha Gunaratne, Gary W Moy, Masashi Kinukawa, Shinji Miyata, Silvia A Mah, Victor D Vacquier

An analysis of expression patterns of genes encoding proteins with catalytic activities

Murat Cankaya, Ana Hernandez, Mehmet Ciftci, Sukru Beydemir, Hasan Ozdemir, Harun Budak, Ilhami Gulcin, Veysel Comakli, Tufan Emircupani, Deniz Ekinci, Muslum Kuzu, Qiuhong Jiang, Gregor Eichele, Omer Kufrevioglu

Comparative genomics and experimental promoter analysis reveal functional liver-specific elements in mammalian hepatic lipase genes

Diederik van Deursen, Gert-Jan Botma, Hans Jansen, Adrie JM Verhoeven

Glycerate kinase of the hyperthermophilic archaeon Thermoproteus tenax: new insights into the phylogenetic distribution and physiological role of members of the three different glycerate kinase classes

Daniel Kehrer, Hatim Ahmed, Henner Brinkmann, Bettina Siebers

Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus

Judith Hübscher, Andrea Jansen, Oliver Kotte, Juliane Sch？fer, Paul A Majcherczyk, Llinos G Harris, Gabriele Bierbaum, Matthias Heinemann, Brigitte Berger-B？chi

Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M Ismail, Jin Xu, Xinping Cui, Timothy J Close

Evaluation of toxicity of the mycotoxin citrinin using yeast ORF DNA microarray and Oligo DNA microarray

Hitoshi Iwahashi, Emiko Kitagawa, Yoshiteru Suzuki, Youji Ueda, Yo-hei Ishizawa, Hitoshi Nobumasa, Yoshihide Kuboki, Hiroshi Hosoda, Yumiko Iwahashi

cis sequence effects on gene expression

Andrew W Bergen, Andrea Baccarelli, Timothy K McDaniel, Kenneth Kuhn, Ruth Pfeiffer, Jerry Kakol, Patrick Bender, Kevin Jacobs, Bernice Packer, Stephen J Chanock, Meredith Yeager

Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray

Johan Vallon-Christersson, Johan Staaf, Anders Kvist, Patrik Medstrand, ？ke Borg, Carlos Rovira

Selection of DDX5 as a novel internal control for Q-RT-PCR from microarray data using a block bootstrap re-sampling scheme

Li-Jen Su, Ching-Wei Chang, Yu-Chung Wu, Kuang-Chi Chen, Chien-Ju Lin, Shu-Ching Liang, Chi-Hung Lin, Jacqueline Whang-Peng, Shih-Lan Hsu, Chen-Hsin Chen, Chi-Ying F Huang

Characterization of the genomic region containing the Shadow of Prion Protein (SPRN) gene in sheep

Evelyne Lampo, Mario Van Poucke, Karine Hugot, Hélène Hayes, Alex Van Zeveren, Luc J Peelman

A population study of the minicircles in Trypanosoma cruzi: predicting guide RNAs in the absence of empirical RNA editing

Sean Thomas, LL Isadora Martinez, Scott J Westenberger, Nancy R Sturm

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey

Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson

Genome evolution in major Escherichia coli O157:H7 lineages

Yongxiang Zhang, Chad Laing, Marina Steele, Kim Ziebell, Roger Johnson, Andrew K Benson, Eduardo Taboada, Victor PJ Gannon

Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon

Jiann-Horng Leu, Chih-Chin Chang, Jin-Lu Wu, Chun-Wei Hsu, Ikuo Hirono, Takashi Aoki, Hsueh-Fen Juan, Chu-Fang Lo, Guang-Hsiung Kou, Hsuan-Cheng Huang

Structural and functional insights into Mimivirus ORFans

Harpreet Saini, Daniel Fischer

Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile

Paolo Fardin, Stefano Moretti, Barbara Biasotti, Annamaria Ricciardi, Stefano Bonassi, Luigi Varesio

Convergence and divergence in gene expression among natural populations exposed to pollution

Marla A Fisher, Marjorie F Oleksiak

Inter-population variability of DEFA3 gene absence: correlation with haplotype structure and population variability

Ester Ballana, Juan González, Nina Bosch, Xavier Estivill

Zebrafish orthologs of human muscular dystrophy genes

Leta S Steffen, Jeffrey R Guyon, Emily D Vogel, Rosanna Beltre, Timothy J Pusack, Yi Zhou, Leonard I Zon, Louis M Kunkel

The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function

Camilla Scheele, Natasa Petrovic, Mohammad A Faghihi, Timo Lassmann, Katarina Fredriksson, Olav Rooyackers, Claes Wahlestedt, Liam Good, James A Timmons

Allelotyping of pooled DNA with 250 K SNP microarrays

Stefan Wilkening, Bowang Chen, Michael Wirtenberger, Barbara Burwinkel, Asta F？rsti, Kari Hemminki, Federico Canzian

Transcriptional profiling of Actinobacillus pleuropneumoniae under iron-restricted conditions

Vincent Deslandes, John HE Nash, Josée Harel, James W Coulton, Mario Jacques

Genetical genomics: use all data

Miguel Pérez-Enciso, José R Quevedo, Antonio Bahamonde

An unexpectedly large and loosely packed mitochondrial genome in the charophycean green alga Chlorokybus atmophyticus

Monique Turmel, Christian Otis, Claude Lemieux

bZIPDB : A database of regulatory information for human bZIP transcription factors

Taewoo Ryu, Juhyun Jung, Sunjae Lee, Ho Nam, Sun Hong, Jae Yoo, Dong-ki Lee, Doheon Lee

Construction and characterization of a full-length cDNA library for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici)

Peng Ling, Meinan Wang, Xianming Chen, Kimberly Campbell

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola

José Vi？uelas, Federica Calevro, Didier Remond, Jacques Bernillon, Yvan Rahbé, Gérard Febvay, Jean-Michel Fayard, Hubert Charles

Identification of candidate genes associated with cell wall digestibility and eQTL (expression quantitative trait loci) analysis in a Flint × Flint maize recombinant inbred line population

Chun Shi, Anna Uzarowska, Milena Ouzunova, Matthias Landbeck, Gerhard Wenzel, Thomas Lübberstedt

Pathways and genes differentially expressed in the motor cortex of patients with sporadic amyotrophic lateral sclerosis

Carsten W Lederer, Antonietta Torrisi, Maria Pantelidou, Niovi Santama, Sebastiano Cavallaro

Mouse SNP Miner: an annotated database of mouse functional single nucleotide polymorphisms

Eli Reuveni, Vasily E Ramensky, Cornelius Gross

Transcriptome analysis of the venom gland of the Mexican scorpion Hadrurus gertschi (Arachnida: Scorpiones)

Elisabeth F Schwartz, Elia Diego-Garcia, Ricardo C Rodríguez de la Vega, Lourival D Possani

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