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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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The Fates of Mutant Lineages and the Distribution of Fitness Effects of Beneficial Mutations in Laboratory Budding Yeast Populations

Evgeni M. Frenkel,Benjamin H. Good,Michael M. Desai

Covariance among independent variables determines the overfitting and underfitting problems in variation partitioning methods: with a special focus on the mixed co-variation

Youhua Chen

Effect of migration in a diffusion model for template coexistence in protocells

Jose F. Fontanari,Maurizio Serva

A Non-Phenomenological Model to Explain Population Growth Behaviors

Fabiano Lemes Ribeiro

Tracing evolutionary links between species

Mike Steel

Traveling Wave Phenomena in a Kermack-McKendrick SIR model

Haiyan Wang,Xiang-Sheng Wang

Widespread signals of convergent adaptation to high altitude in Asia and America

Matthieu Foll,Oscar E. Gaggiotti,Josephine T. Daub,Alexandra Vatsiou,Laurent Excoffier

Dynamics of interacting diseases

Joaquín Sanz,Cheng-Yi Xia,Sandro Meloni,Yamir Moreno

Multiple Lac-mediated loops revealed by Bayesian statistics and tethered particle motion

Stephanie Johnson,Jan-Willem van de Meent,Rob Phillips,Chris H. Wiggins,Martin Lindén

Nucleotide-induced conformational motions and transmembrane gating dynamics in a bacterial ABC transporter

Holger Flechsig

Discovering functional DNA elements using population genomic information: A proof of concept using human mtDNA

Daniel R. Schrider,Andrew D. Kern

Comparing open and closed molecular self-assembly

Martin Castelnovo,Timothée Verdier,Lionel Foret

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

Amie J. Radenbaugh,Singer Ma,Adam Ewing,Joshua Stuart,Eric Collisson,Jingchun Zhu,David Haussler

Opsin vs opsin: new materials for biotechnological applications

E. Alfinito,L. Reggiani

Motif statistics of artificially evolved and biological networks

Bur？in Danac？,Mehmet Ali An？l,Ay？e Erzan

Estimating the Energetic State of Malignant Cells from RNA Transcription and Protein Interaction Network Data

Edward A. Rietman,Rainer Sachs,Philip Hahnfeldt,Lynn Hlatky

Greatwall-phosphorylated Endosulfine is Both an Inhibitor and a Substrate of PP2A-B55 Heterotrimers

Byron C. Williams,Joshua J. Filter,Kristina A. Blake-Hodek,Brian E. Wadzinski,Nicholas J. Fuda,David Shalloway,Michael L. Goldberg

Thermodynamic Order Parameters and Statistical-Mechanical Measures for Characterization of the Burst and Spike Synchronizations of Bursting Neurons

Sang-Yoon Kim,Woochang Lim

Phylogenetic Stochastic Mapping without Matrix Exponentiation

Jan Irvahn,Vladimir N. Minin

Frequency-Domain Order Parameters for the Burst And Spike Synchronization Transitions of Bursting Neurons

Sang-Yoon Kim,Woochang Lim

Spatiotemporal Dissociation of Brain Activity underlying Subjective Awareness, Objective Performance and Confidence

Qi Li,Zachary Hill,Biyu J. He

Synaptic polarity of the interneuron circuit controlling C. elegans locomotion

Franciszek Rakowski,Jagan Srinivasan,Paul W. Sternberg,Jan Karbowski

Exact detection of direct links in networks of interacting dynamical units

Nicolás Rubido,Arturo C. Martí,Ezequiel Bianco-Martínez,Celso Grebogi,Murilo S. Baptista,Cristina Masoller

Understanding brain networks and brain organization

Luiz Pessoa

Hub-activated signal transmission in complex networks

Sven Jahnke,Raoul-Martin Memmesheimer,Marc Timme

Quantum(-like) decision making: on validity of the Aumann theorem

Andrei Khrennikov,Irina Basieva

Sisyphus Effect in Pulse Coupled Excitatory Neural Networks with Spike-Timing Dependent Plasticity

Kaare Mikkelsen,Alberto Imparato,Alessandro Torcini

Non-Markovian stochastic epidemics in extremely heterogeneous populations

Thomas House

Exact analytical solutions of the Susceptible-Infected-Recovered (SIR) epidemic model and of the SIR model with equal death and birth rates

Tiberiu Harko,Francisco S. N. Lobo,M. K. Mak

Phase Transitions in Systems of Interacting Species

Margarita Ifti,Birger Bergersen

Multidimensional epistasis and the transitory advantage of sex

Stefan Nowak,Johannes Neidhart,Ivan G. Szendro,Joachim Krug

Evolutionary Ecology Models of Weed Life History

Jack Dekker

Step selection techniques uncover the environmental predictors of space use patterns in flocks of Amazonian birds

Jonathan R. Potts,Karl Mokross,Philip C Stouffer,Mark A. Lewis

Flagellar Synchronization Through Direct Hydrodynamic Interactions

Douglas R. Brumley,Kirsty Y. Wan,Marco Polin,Raymond E. Goldstein

A method of `speed coefficients' for biochemical model reduction applied to the NF-kappaB system

Simon West,Lloyd J. Bridge,Michael R. H. White,Pawel Paszek,Vadim N. Biktashev

Mechanosensitive Channel Activation by Diffusio-Osmotic Force

Douwe Jan Bonthuis,Ramin Golestanian

Early warning signs in social-ecological networks

Samir Suweis,Paolo D'Odorico

Adaptive evolution of molecular phenotypes

Torsten Held,Armita Nourmohammad,Michael L？ssig

A chromatin structure based model accurately predicts DNA replication timing in human cells

Yevgeniy Gindin,Manuel S. Valenzuela,Mirit I. Aladjem,Paul S. Meltzer,Sven Bilke

Selscan: an efficient multi-threaded program to perform EHH-based scans for positive selection

Zachary A Szpiech,Ryan D Hernandez

Breathing dynamics based parameter sensitivity analysis of hetero-polymeric DNA

Srijeeta Talukder,Shrabani Sen,Prantik Chakraborti,Ralf Metzler,Suman K Banik,Pinaki Chaudhury

MaxSSmap: A GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence

Turki Turki,Usman Roshan

Does quantum entanglement in DNA synchronize the catalytic centers of type II restriction endonucleases?

P. Kurian,G. Dunston,J. Lindesay

Dispersal limitation and roughening of the ecological interface

Andrew J. Allstadt,Jonathan A. Newman,Jonathan A. Walter,G. Korniss,Thomas Caraco

An ecosystem with Holling type II response and predators' genetic variability

Clara Viberti,Ezio Venturino

General relationships between consumer dispersal, resource dispersal and metacommunity diversity

Bart Haegeman,Michel Loreau

Adaptation in tunably rugged fitness landscapes: The Rough Mount Fuji Model

Johannes Neidhart,Ivan G. Szendro,Joachim Krug

How to develop smarter host mixtures to control plant disease?

Alexey Mikaberidze,Bruce McDonald,Sebastian Bonhoeffer

Population genetics on islands connected by an arbitrary network: An analytic approach

George W A Constable,Alan J McKane

Can one hear the shape of a population history?

Junhyong Kim,Elchanan Mossel,Miklós Z. Rácz,Nathan Ross

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