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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Spike-Train Responses of a Pair of Hodgkin-Huxley Neurons with Time-Delayed Couplings

Hideo Hasegawa

Generalized-Ensemble Algorithms for Molecular Simulations of Biopolymers

Ayori Mitsutake,Yuji Sugita,Yuko Okamoto

Free energy approximations in simple lattice proteins

Dirk Reith,Thomas Huber,Florian Mueller-Plathe,Andrew E. Torda

Simplification of protein representation from the contact potentials between residues

Jun Wang,Wei Wang

Putting Proteins back into Water

Paolo De Los Rios,Guido Caldarelli

Amino acid classes and the protein folding problem

Marek Cieplak,Neal S. Holter,Amos Maritan,Jayanth R. Banavar

Dynamic concentration of motors in microtubule arrays

Francois Nedelec,Thomas Surrey,A. C. Maggs

The large-scale organization of metabolic networks

H. Jeong,B. Tombor,R. Albert,Z. N. Oltvai,A. -L. Barabasi

Predicting and generating time series by neural networks: An investigation using statistical physics

Wolfgang Kinzel

Energetic Components of Cooperative Protein Folding

Huseyin Kaya,Hue Sun Chan

Stability Puzzles in Phage Lambda

Erik Aurell,Stanley Brown,Johan Johanson,Kim Sneppen

Application of two-parameter dynamical replica theory to retrieval dynamics of associative memory with non-monotonic neurons

Toshiyuki Tanaka,Shinsuke Kakiya,Masato Okada

Phase Transitions and Oscillations in a Lattice Prey-Predator Model

Tibor Antal,Michel Droz

Twirling Elastica: Kinks, Viscous Drag, and Torsional Stress

Stephan A. Koehler,Thomas R. Powers

Fluctuation-Facilitated Charge Migration along DNA

R. Bruinsma,G. Gruner,M. R. D'Orsogna,J. Rudnick

Random replicators with high-order interactions

Viviane M. de Oliveira,J. F. Fontanari

Correlated percolation patterns in PEF damaged cellular material

N. I. Lebovka,M. I. Bazhal,E. I. Vorobiev

Time evolution of the Partridge-Barton Model

Roberto N. Onody,Nazareno G. F. de Medeiros

Temporal structure in neuronal activity during working memory in Macaque parietal cortex

B. Pesaran,J. S. Pezaris,M. Sahani,P. P. Mitra,R. A. Andersen

Stabilization/destabilization of cell membranes by multivalent ions: Implications for membrane fusion and division

Bae-Yeun Ha

Dynamical chaos and power spectra in toy models of heteropolymers and proteins

Mai Suan Li,Marek Cieplak,Nazar Sushko

Beyond storage capacity in a single model neuron: Continuous replica symmetry breaking

G. Gyorgyi,P. Reimann

Exactness of the Annealed and the Replica Symmetric Approximations for Random Heteropolymers

Ugo Bastolla,Peter Grassberger

Energy Storage in a Hamiltonian System in Partial Contact with a Heat Bath

Naoko Nakagawa,Kunihiko Kaneko

Analysis of Oscillator Neural Networks for Sparsely Coded Phase Patterns

Masaki Nomura,Toshio Aoyagi

Coherence in a coupled network: Implication for brain function

Zhen Ye

Extended Kinetic Models with Waiting-Time Distributions: Exact Results

Anatoly B. Kolomeisky,Michael E. Fisher

Symmetry and designability for lattice protein models

Tairan Wang,Jonathan Miller,Ned S. Wingreen,Chao Tang,Ken A. Dill

Statistical Mechanics of Recurrent Neural Networks I. Statics

A. C. C. Coolen

Statistical Mechanics of Recurrent Neural Networks II. Dynamics

A. C. C. Coolen

A Novel Method for Sampling Alpha-Helical Protein Backbones

Boris Fain,Michael Levitt

Force-Induced Melting and Thermal Melting of a Double-Stranded Biopolymer

Haijun Zhou

Replica-exchange multicanonical algorithm and multicanonical replica-exchange method for simulating systems with rough energy landscape

Yuji Sugita,Yuko Okamoto

Thermodynamic Capacity of a Protein

Thomas M A Fink,Robin C Ball

Microscopic Theory of Protein Folding Rates.I: Fine Structure of the Free Energy Profile and Folding Routes from a Variational Approach

John J. Portman,Shoji Takada,Peter G. Wolynes

Microscopic Theory of Protein Folding Rates.II: Local Reaction Coordinates and Chain Dynamics

John J. Portman,Shoji Takada,Peter G. Wolynes

Active Fusion and Fission Processes on a Fluid Membrane

Madan Rao,Sarasij R C

Group selection models in prebiotic evolution

D. Alves,P. R. A. Campos,A. T. C. Silva,J. F. Fontanari

Sequencing of folding events in Go-like proteins

Trinh Xuan Hoang,Marek Cieplak

Kinetic Capacity of a Protein

Robin C Ball,Thomas M A Fink

The Emergence of Spatial Complexity in the immune System

Yoram Louzoun,Sorin Solomon,Henri Atlan,Irun R. Cohen

Coiling Instability of Multilamellar Membrane Tubes with Anchored Polymers

Ilan Tsafrir,Marie-Alice Guedeau-Boudeville,Daniel Kandel,Joel Stavans

Phase transition in a spatial Lotka-Volterra model

Gyorgy Szabo,Tamas Czaran

Entropy concepts and DNA investigations

Olga V. Kirillova

A Model for Bone Strength and Osteoporotic Fractures

Gemunu H. Gunaratne,Chamith S. Rajapaksa,Kevin E. Bassler,Kishore K. Mohanty,Sunil J. Wimalawansa

Geometry Selects Highly Designable Structures

V. Shahrezaei,M. R. Ejtehadi

On Hydrophobicity Correlations in Protein Chains

Anders Irb？ck,Erik Sandelin

Escape of a chain molecule over a barrier - the kink mechanism

K. L. Sebastian,Alok K. R. Paul

Topological and energetic factors: what determines the structural details of the transition state ensemble and "on-route" intermediates for protein folding? An investigation for small globular proteins

Cecilia Clementi,Hugh Nymeyer,Jose' Nelson Onuchic

Investigation of routes and funnels in protein folding by free energy functional methods

Steven S. Plotkin,Jose N. Onuchic

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