| [1] | Carracedo JC, Day S, Guillou H, Rodriguez Badiola E, Canas JA, et al. (1998) Hotspot volcanism close to a passive continental margin: the Canary Island. Geol Mag 135: 119–131.
|
| [2] | López-Martínez N, López-Jurado L (1987) Un nuevo múrido gigante del Cuaternario de Gran Canaria. Canariomys tamarani nov. sp. (Rodentia, Mammalia). Do？ana Acta Vertebr 2: 1–66.
|
| [3] | Hutterer R, Lopez-Martinez N, Michaux J (1988) A new rodent from Quaternary deposits of the Canary Islands and its relationships with neogene and recent murids of Europe and Africa. Paleovertebrata 18: 241–262.
|
| [4] | Bocherens H, Michaux J, Garcia Talavera F, Van der Plicht J (2006) Extinction of endemic vertebrates on islands: The case of the giant rat Canariomys bravoi (Mammalia, Rodentia) on Tenerife (Canary Islands, Spain). CR Palevol 5: 885–891.
|
| [5] | Alcover JA, Rando JC, Garcia-Talavera F, Hutterer R, Michaux J, et al. (2009) A reappraisal of the stratigraphy of Cueva des Llano (Fuerteventura) and the chronology of the introduction of the house mouse (Mus musculus) into the Canary Islands. Paleogeogr Palaeoclimatol Paleoecol 277: 184–190.
|
| [6] | Rando JC, Alcover JA, Navarro JF, Garcia-Talavera F, Hutterer R, et al. (2008) Chronology and causes of the extinction of the Lava Mouse, Malpaisomys insularis (Rodentia: Muridae) from the Canary Islands. Quaternary Res 70: 141–148.
|
| [7] | Rando JC, Alcover JA (2008) Evidence for a second western Palaearctic seabird extinction during the last Millennium: the Lava Shearwater Puffinus olsoni. Ibis 150: 188–192.
|
| [8] | Michaux J, Hutterer R, Lopez-Martinez N (1991) New fossil faunas from Fuerteventura, Canary Islands: Evidence for Pleistocene age of endemic rodents and shrews. CR Acad Sci Paris, Série II: 801–806.
|
| [9] | Musser G, Carleton M (2005) Superfamily Muroidea. In: Wilson DE, Reeder DM, editors. Mammal species of the world A taxonomic and geographic reference Volume 2. 3rd edition. Baltimore: Johns Hopkins University. pp. 894–1531.
|
| [10] | Lecompte E, Aplin K, Denys C, Catzeflis F, Chades M, et al. (2008) Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily. BMC Evol Biol 8: 199.
|
| [11] | Montgelard C (1992) Albumin preservation in fossil bones and systematics of Malpaisomys insularis (Muridae, Rodentia), an extinct rodent of the Canary Islands. Hist Biol 6: 293–302.
|
| [12] | Lopez-Martinez N, Michaux J, Hutterer R (1998) The skull of Stephanomys and a review of Malpaisomys Relationships (Rodentia: Muridae): Taxonomic Ingongruence in Murids. J Mamm Evol 5: 185–215.
|
| [13] | Renaud S, Michaux J (2004) Parallel evolution in molar outline of murine rodents: the case of the extinct Malpaisomys insularis (Eastern Canary Islands). Zool J Linn Soc 142: 555–572.
|
| [14] | Calvignac S, Hughes S, Tougard C, Michaux J, Thevenot M, et al. (2008) Ancient DNA evidence for the loss of a highly divergent brown bear clade during historical times. Mol Ecol 17: 1962–1970.
|
| [15] | Hughes S, Hayden TJ, Douady CJ, Tougard C, Germonpre M, et al. (2006) Molecular phylogeny of the extinct giant deer, Megaloceros giganteus. Mol Phylogenet Evol 40: 285–291.
|
| [16] | Calvignac S, Terme JM, Hensley SM, Jalinot P, Greenwood AD, et al. (2008) Ancient DNA identification of early 20th century simian T-cell leukemia virus type 1. Mol Biol Evol 25: 1093–1098.
|
| [17] | Rohland N, Hofreiter M (2007) Ancient DNA extraction from bones and teeth. Nat Protoc 2: 1756–1762.
|
| [18] | Cooper A (1994) Dried samples : soft tissues, DNA from museum specimens. In: Hermann BH, Hummel S, editors. Ancient DNA, Recovery and analysis of genetic material from paleontological, archeological, museum, medical, and forensic samples. Springer-Verlag. pp. 149–165.
|
| [19] | H？nni C, Brousseau T, Laudet V, Stehelin D (1995) Isopropanol precipitation removes PCR inhibitors from ancient bone extracts. Nucleic Acids Res 23: 881–882.
|
| [20] | Michaux J, Reyes A, Catzeflis F (2001) Evolutionary history of the most speciose mammals: molecular phylogeny of muroid rodents. Mol Biol Evol 18: 2017–2031.
|
| [21] | Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543–548.
|
| [22] | Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.
|
| [23] | Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690.
|
| [24] | Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57: 758–771.
|
| [25] | Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
|
| [26] | Rambaut A, Drummond A (2007) Tracer v1.4, Available: http://tree.bio.ed.ac.uk/software/tracer？/. Accessed 2012 January 5.
|
| [27] | Nylander JAA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey LJ (2004) Bayesian phylogenetic analysis of combined data. Syst Biol 53: 47–67.
|
| [28] | Newton MA, Raftery AE (1994) Approximate Bayesian inference by the weighted likelihood bootstrap (with Discussion). J R Stat Soc, series B 56: 3–48.
|
| [29] | Kass RE, Raftery AE (1995) Bayes factors. J Am Stat Assoc 90: 773–795.
|
| [30] | Goldman N, Anderson JP, Rodrigo AG (2000) Likelihood-based tests of topologies in phylogenetics. Syst Biol 49: 652–670.
|
| [31] | Swofford DL (1998) PAUP*. Phylogenetic Analysis using Parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
|
| [32] | Shimodaira H, Hasegawa M (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246–1247.
|
| [33] | Thorne JL, Kishino H (2002) Divergence time and evolutionary rate estimation with multilocus data. Syst Biol 51: 689–702.
|
| [34] | Drummond AJ, Ho SY, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88.
|
| [35] | Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
|
| [36] | Steppan S, Adkins R, Anderson J (2004) Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. Syst Biol 53: 533–553.
|
| [37] | Jacobs LL, Flynn LJ (2005) Of mice… again: the Siwalik rodent record, murine distribution, and molecular clocks. In: Lieberman D, Smith R, Kelley J, editors. Interpreting the past: essays on human, primate and mammal evolution. Leiden: Brill Academic Publisher. pp. 63–80.
|
| [38] | Michaux J, Aguilar J, Montuire S, Wolff A, Legendre S (1997) Les Murinae (Rodentia, Mammalia) néogènes du Sud de la France: Evolution et Paléoenvironnement. Geobios 20: 379–385.
|
| [39] | Winkler AJ (2002) Neogene paleobiogeography and East African paleoenvironments: contributions from the Tugen Hills rodents and lagomorphs. J Hum Evol 42: 237–256.
|
| [40] | Rutschmann F (2005) Bayesian molecular dating using PAML/MULTIDIVTIME. A step-by-step manual, v. 1.4. Available: http://statgen.ncsu.edu/thorne/multidivt？ime.html. Accessed 2012 January 5.
|
| [41] | Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555–556.
|
| [42] | Yoder AD, Yang Z (2004) Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. Mol Ecol 13: 757–773.
|
| [43] | den Tex RJ, Maldonado JE, Thorington R, Leonard JA (2010) Nuclear copies of mitochondrial genes: another problem for ancient DNA. Genetica 138: 979–984.
|
| [44] | Ramirez O, Illera JC, Rando JC, Gonzalez-Solis J, Alcover JA, et al. (2010) Ancient DNA of the extinct lava shearwater (Puffinus olsoni) from the Canary Islands reveals incipient differentiation within the P. puffinus complex. PLoS One 5: e16072.
|
| [45] | Dubey S, Michaux J, Brünner H, Hutterer R, Vogel P (2009) False phylogenies on wood mice due to cryptic cytochrome b pseudogene. Mol Phylogenet Evol 50: 633–641.
|
| [46] | González-Ittig R, Gardenal C (2007) Co-amplification of mitochondrial pseudogenes in Calomys musculinus (Rodentia, Cricetidae): a source of error in phylogeographic studies. Genome Biol 51: 73–78.
|
| [47] | Orlando L, Leonard JA, Thenot A, Laudet V, Guerin C, et al. (2003) Ancient DNA analysis reveals woolly rhino evolutionary relationships. Mol Phylogenet Evol 28: 485–499.
|
| [48] | Johns GC, Avise JC (1998) A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol 15: 1481–1490.
|
| [49] | Hofreiter M, Jaenicke V, Serre D, Haeseler Av A, Paabo S (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29: 4793–4799.
|
| [50] | Gilbert MT, Hansen AJ, Willerslev E, Rudbeck L, Barnes I, et al. (2003) Characterization of genetic miscoding lesions caused by postmortem damage. Am J Hum Genet 72: 48–61.
|
| [51] | Gilbert MT, Bandelt HJ, Hofreiter M, Barnes I (2005) Assessing ancient DNA studies. Trends Ecol Evol 20: 541–544.
|
| [52] | Pagès M, Desse-Berset N, Tougard C, Brosse L, H？nni C, et al. (2009) Historical presence of the sturgeon Acipenser sturio in the Rh？ne basin determined by the analysis of ancient DNA cytochrome b sequences. Conserv Genet 10(1): 217–224.
|
| [53] | Misonne X (1969) African and Indo-Australian Muridae. Evolutionary trends. Tervuuren: Ann Mus Royal Afr Centr. 219 p.
|
| [54] | Rowe KC, Reno ML, Richmond DM, Adkins RM, Steppan SJ (2008) Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae). Mol Phylogenet Evol 47: 84–101.
|
| [55] | Michaux JR, Chevret P, Filippucci MG, Macholan M (2002) Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA. Mol Phylogenet Evol 23: 123–136.
|
| [56] | Sato J, Suzuki H (2004) Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the Cytb gene, RAG 1, and IRBP. Can J Zool 82: 1343–1351.
|
| [57] | Fulton TL, Strobeck C (2006) Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets. Mol Phylogenet Evol 41: 165–181.
|
| [58] | Suzuki H, Shimada T, Terashima M, Tsuchiya K, Aplin K (2004) Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences. Mol Phylogenet Evol 33: 626–646.
|
| [59] | Chevret P, Veyrunes F, Britton-Davidian J (2005) Molecular phylogeny of the genus Mus (Rodentia: Murinae) based on mitochondrial and nuclear data. Biol J Linn Soc 84: 417–427.
|
| [60] | Shimada T, Aplin K, Jenkins P, Suzuki H (2007) Rediscovery of Mus nitidulus Blyth (Rodentia: Muridae), an endemic murine rodent of the central basin of Myanmar. Zootaxa 1498: 45–68.
|
| [61] | Chaimanee Y (1998) Plio-Pleistocene Rodents of Thailand. 303 p. Thai Studies in Biodiversity, editor.
|
| [62] | Geraads D (1998) Rongeurs du Mio-Pliocène de Lissasfa (Casablanca, Maroc). Geobios 31: 229–245.
|
| [63] | Jacobs LL (1978) Fossil rodents (Rhizomyidae and Muridae) from Neogene Siwalik deposits, Pakistan. Mus North Arizona Press 104.
|
| [64] | Boye P, Hutterer R, Lopez-Martinez N, Michaux J (1992) A reconstruction of the Lava mouse (Malpaisomys insularis), an extinct rodent of the Canary Islands. Z Saugetierkd 57: 29–38.
|
| [65] | Nowak RM (1999) Walker's Mammals of the World. Volume II. Baltimore, MD: The John Hopkins University Press. 1936 p.
|
| [66] | Kuss SE, Misonne X (1968) Pleistoc？ne Muriden des Insel Kreta. N Jb Geol Pal？ont Abh 132: 55–69.
|
| [67] | Mayhew DP (1977) The endemic Pleistocene Murids of Crete I and II; Proceedings of the Koninklijke Akademie van Wetenschappen (Series B). 80. (3): pp. 182–214.
|
| [68] | Damuth J (1993) Cope's rule, the island rule and the scaling of mammalian population density. Nature 365: 748–750.
|
| [69] | Millien V, Damuth J (2004) Climate change and size evolution in an island rodent species: new perspectives on the island rule. Evolution 58: 1353–1360.
|
| [70] | Michaux J, Chevret P, Renaud S (2007) Morphological diversity of Old World rats and mice (Rodentia, Muridae) mandible in relation with phylogeny and adaptation. J Zool Syst Evol Res 45: 263–279.
|
| [71] | Firmat C, Gomes Rodrigues H, Hutterer R, Rando JC, Alcover JA, et al. (2011) Diet of the extinct Lava mouse Malpaisomys insularis from the Canary Islands: insights from dental microwear. Naturwissenschaften 98: 33–37.
|
| [72] | Battistuzzi FU, Filipski A, Hedges SB, Kumar S (2010) Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals. Mol Biol Evol 27: 1289–1300.
|
| [73] | Jansa SA, Barker FK, Heaney LR (2006) The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences. Syst Biol 55: 73–88.
|
| [74] | Robins JH, McLenachan PA, Phillips MJ, Craig L, Ross HA, et al. (2008) Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes. Mol Phylogenet Evol.
|
| [75] | Aguilar J, Michaux J (1996) The beginning of the age of Murinae (Mammalia: Rodentia) in southern France. Acta Zool Cracov 39: 35–45.
|
| [76] | Jacobs LL (1985) The beginning of the age of Murids in Africa. Acta Zool Fenn 170: 149–151.
|
| [77] | Winkler AJ, Denys C, Avery DM (2010) Chapter 17: Rodentia. Cenozoic Mammals of Africa. In: Werdelin L, Sanders WJ, editors. Berkeley: University of California Press. pp. 263–305.
|
| [78] | Navarro JF, Martín E, Rodríguez A (1990) Las primeras etapas del programa de excavaciones en las Cuevas de San Juan y su aportación a la diacronía de la Prehistoria de Canarias. Investigaciones Arqueológicas en Canarias II: 189–201.
|
| [79] | Atoche P, Paz JA, Ramírez MA, Ortiz ME (1995) Evidencias arqueológicas del mundo romano en Lanzarote (Islas Canarias). 149 p. Servicio de Publicaciones del Cabildo de Lanzarote: Arrecife.
|
| [80] | Bonhomme F (1986) Evolutionary relationships in the genus Mus. In: Potter M, Nadeau J, Cancro M, editors. Current topics in microbiology and immunology. New York: Springer Verlag. pp. 19–34.
|
| [81] | Bonhomme F (1992) Genetic diversity and evolution in the genus Mus. In: Goldowitz D, Wahlsten D, Wimer R, editors. Techniques for the genetic analysis of brain and behavior. Elsevier Sciences Publishers. pp. 41–56.
|
| [82] | Chevret P, Jenkins P, Catzeflis F (2003) Evolutionary systematics of the Indian mouse Mus famulus Bonhote, 1898: molecular (DNA/DNA hybridization and 12S rRNA sequences) and morphological evidences. Zool J Linn Soc 137: 385–401.
|
| [83] | Diepenbroek M, Grobe H, Sieger R (2000) PanMap Available: http://www.pangaea.de/Software/PanMap. Accessed 2012 January 5.
|
| [84] | Haq BU, Hardenbol J, Vail PR (1987) Chronology of fluctuating sea level since the Triassic. Science 235: 1156–1167.
|
