Cloning of a chitinase gene from Ewingella americana, a pathogen of the cultivated mushroom, Agaricus bisporus

we have isolated a gene encoding a chitinase (ec 3.2.1.14) from ewingella americana, a recently described pathogen of the mushroom agaricus bisporus. this gene, designated chia (embl/genbank/ddbj accession number x90562), was cloned by expression screening of a plasmid-based e. americana hindiii genomic library in escherichia coli using remazol brilliant violet-stained carboxymethylated chitin incorporated into selective medium. the chia gene has a 918-bp orf, terminated by a taa codon, with a calculated polypeptide size of 33.2 kda, likely corresponding to a previously purified and characterised 33-kda endochitinase from e. americana. the deduced amino acid sequence shares 33% identity with chitinase ii from aeromonas sp. no. 10s-24 and 7.8% identity with a chitinase from saccharopolyspora erythraeus. homology to other chitinase sequences was otherwise low. the peptide sequence deduced from chia lacks a typical n-terminal signal sequence and also lacks the chitin binding and type iii fibronectin homology units common to many bacterial chitinases. the possibility that this chitinase is not primarily adapted for the environmental mineralisation of pre-formed chitin, but rather for the breakdown of nascent chitin, is discussed in the context of mushroom disease.