Influence of the Nature of the Azo Ligand on the Structural, Electronic, and Spectroscopic Properties of Ruthenium RuCl2L2 Complexes: A Comparative DFT and TD-DFT Study
This study examines the influence of the number of nitrogen atoms in azo ligands on the geometric, thermodynamic, electronic, and spectroscopic properties of the trans isomers (γ and δ) of ruthenium (II) complexes of the formula RuCl2L2 (L = azben, azpy, or papm). The calculations were performed using density functional theory (DFT) and time-dependent density functional theory (TD-DFT) at the B3LYP/Lanl2DZ level to determine the optimized structures, thermodynamic parameters, reactivity descriptors, electronic interactions, and electronic absorption properties. The results show that substituting pyridine with pyrimidine has little effect on the geometry of the complexes. However, the substitution of pyridine with phenyl, in the case of the γ-RuCl2(azben)2 isomer, profoundly alters the complex’s octahedral structure. Also, it significantly alters their stability and reactivity. At 298.15 K, the formation of the RuCl2(papm)2 and RuCl2(azpy)2 isomers is spontaneous and exothermic, whereas the formation of the RuCl2(azben)2 isomers is thermodynamically unfavorable under the same conditions. The RuCl2(azpy)2 complexes appear to be the most thermodynamically stable. Analysis of frontier orbitals and global reactivity descriptors indicates that replacing azopyridine with azobenzene increases the complexes’ electronic reactivity. In particular, the γ-RuCl2(azben)2 isomer exhibits the greatest affinity for interactions with DNA bases, making it a promising candidate for anticancer applications. Furthermore, TD-DFT calculations reveal that all complexes absorb in the visible spectrum via MLCT (Metal-to-Ligand Charge Transfer) transitions. These optical properties suggest that these compounds could serve as promising photosensitizers for dynamic cancer phototherapy.
References
[1]
De Filippis, B., Della Valle, A., Ammazzalorso, A., Maccallini, C., Tesse, G., Amoroso, R., et al. (2024) Azobenzene as Multi-Targeted Scaffold in Medicinal Chemistry. Molecules, 29, Article 5872. https://doi.org/10.3390/molecules29245872
[2]
Aykut, D., Alpaslan, B., Hazal, K., Pinar, T.T. and Fati, Y. (2023) Obtaining of Novel Pyrazolo Pyrimidine Disazo Dyes Derived from 4-Position and a Theoretical and Experimental Comparison of Their Characteristic Properties. Research Square. https://doi.org/10.21203/rs.3.rs-2521954/v1
[3]
Dembitsky, V.M. and Terent’ev, A.O. (2025) Azo Dyes and the Microbial World: Synthesis, Breakdown, and Bioactivity. Microbiology Research, 16, Article 100. https://doi.org/10.3390/microbiolres16050100
[4]
Affi, S.T., Bamba, K. and Ziao, N. (2015) Computational Characterization of Organometallic Ligands Coordinating Metal: Case of Azopyridine Ligands. Journal of Theoretical and Computational Chemistry, 14, Article ID: 1550006. https://doi.org/10.1142/s0219633615500066
[5]
Mohamed, M.S., Awad, S.M., El-tawab, N.A.A. and Ahmed, N.M. (2022) An Overview on Synthesis and Biological Activity of Pyrimidines. World Journal of Advanced Research and Reviews, 15, 272-296. https://doi.org/10.30574/wjarr.2022.15.1.0689
[6]
Santra, P.K., Misra, T.K., Das, D., Sinha, C., Slawin, A.M.Z. and Woollins, J.D. (1999) Chemistry of Azopyrimidines. Part II. Synthesis, Spectra, Electrochemistry and X-Ray Crystal Structures of Isomeric Dichloro Bis[2-(Arylazo)Pyrimidine] Complexes of Ruthenium(II). Polyhedron, 18, 2869-2878. https://doi.org/10.1016/s0277-5387(99)00189-8
[7]
Hotze, A.C.G., Caspers, S.E., de Vos, D., Kooijman, H., Spek, A.L., Flamigni, A., et al. (2004) Structure-Dependent in Vitro Cytotoxicity of the Isomeric Complexes [Ru(L)2Cl2] (L = o-Tolylazopyridine and 4-Methyl-2-Phenylazopyridine) in Comparison to [Ru(azpy)2Cl2]. JBIC Journal of Biological Inorganic Chemistry, 9, 354-364. https://doi.org/10.1007/s00775-004-0531-6
[8]
Misra, T.K., Das, D., Sinha, C., Ghosh, and Pal, C.K. (1998) Chemistry of Azoimidazoles: Synthesis, Spectral Characterization, Electrochemical Studies, and X-Ray Crystal Structures of Isomeric Dichloro Bis[1-Alkyl-2-(Arylazo)Imidazole] Complexes of Ruthenium(II). Inorganic Chemistry, 37, 1672-1678. https://doi.org/10.1021/ic970446p
[9]
Nobel, N.K., Kangah, N.J.B., Missa, E.J., Stéphane, D.G., Patrice, O.W., Bamba, K., et al. (2025) Structure-Activity Relationships of Substituted Ruthenium Azopyridine Complexes: A DFT and QSAR Study for Anticancer Applications. Chemical Science International Journal, 34, 70-85. https://doi.org/10.9734/csji/2025/v34i2958
[10]
N’guessan, K.N., Guy-Richard Koné, M., Bamba, K., Wawohinlin Patrice, O. and Ziao, N. (2017) Quantitative Structure Anti-Cancer Activity Relationship (QSAR) of a Series of Ruthenium Complex Azopyridine by the Density Functional Theory (DFT) Method. Computational Molecular Bioscience, 7, 19-31. https://doi.org/10.4236/cmb.2017.72002
[11]
Hotze, A.C.G., van der Geer, E.P.L., Caspers, S.E., Kooijman, H., Spek, A.L., Haasnoot, J.G., et al. (2004) Coordination of 9-Ethylguanine to the Mixed-Ligand Compound α-[Ru(azpy)(bpy)Cl2] (azpy = 2-Phenylazopyridine and bpy = 2,2’-Bipyridine). An Unprecedented Ligand Positional Shift, Correlated to the Cytotoxicity of This Type of [RuL2Cl2] (with L = azpy or bpy) Complex. Inorganic Chemistry, 43, 4935-4943. https://doi.org/10.1021/ic035390f
[12]
Krause, R.A. and Krause, K. (1980) Chemistry of Bipyridyl-Like Ligands. Isomeric Complexes of Ruthenium(II) with 2-(Phenylazo)Pyridine. Inorganic Chemistry, 19, 2600-2603. https://doi.org/10.1021/ic50211a024
[13]
Velders, A.H., van der Schilden, K., Hotze, A.C.G., Reedijk, J., Kooijman, H. and Spek, A.L. (2004) Dichlorobis(2-Phenylazopyridine)Ruthenium(II) Complexes: Characterisation, Spectroscopic and Structural Properties of Four Isomers. Dalton Transactions, No. 3, 448-455. https://doi.org/10.1039/b313182c
[14]
Nobel, N.K., Bamba, K., Patrice, O.W. and Ziao, N. (2017) Theoretical Investigation of the Structure Activity Relationships (SARs) of a Series of Five Isomeric α, β, γ, δ, ε Ruthenium Complexes RuCl2L2 with Azopyridine Ligands [L= azpy, tazpy, 4mazpy, 5mazpy]. International Journal of Engineering Research and Applications, 7, 58-70. https://doi.org/10.9790/9622-0706015870
[15]
Lu, L., Hu, H., Hou, H. and Wang, B. (2013) An Improved B3LYP Method in the Calculation of Organic Thermochemistry and Reactivity. Computational and Theoretical Chemistry, 1015, 64-71. https://doi.org/10.1016/j.comptc.2013.04.009
[16]
Chiodo, S., Russo, N. and Sicilia, E. (2006) LANL2DZ Basis Sets Recontracted in the Framework of Density Functional Theory. The Journal of Chemical Physics, 125, Article ID: 104107. https://doi.org/10.1063/1.2345197
[17]
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., et al. (2009) Gaussian 09, Revison A.02. Wallingford Center Inc.
[18]
Kone, M.G., Ouattara, L., N’Guessan, K.N., Dembele, G.S., Karamanis, P. and Ziao, N. (2024) Theoretical Study of the Stability and Chemical Reactivity of a Series of Dihydropyrazoles with Antiproliferative Activities. Chemical Science International Journal, 33, 102-113. https://doi.org/10.9734/csji/2024/v33i6929
[19]
Kan Lucien Yao, N., Soro, D., Nobel N’Guessan, K., Benié, A., Dembele, S., Akoua Kouassi-Yao, P., et al. (2025) A Comparative DFT Study of the Chemical Reactivity of Diastereoisomers Cis/Trans Clovamides and Derivatives, Isolated from Icacina mannii. Journal of Materials Physics and Chemistry, 13, 8-15. https://doi.org/10.12691/jmpc-13-1-2
[20]
Ritter, S. (2003) Hard and Soft Acids and Bases. Chemical & Engineering News Archive, 81, 50. https://doi.org/10.1021/cen-v081n007.p050
[21]
Melnikov, F., Geohagen, B.C., Gavin, T., LoPachin, R.M., Anastas, P.T., Coish, P., et al. (2020) Application of the Hard and Soft, Acids and Bases (HSAB) Theory as a Method to Predict Cumulative Neurotoxicity. NeuroToxicology, 79, 95-103. https://doi.org/10.1016/j.neuro.2020.04.009
[22]
Ula?, Y. (2020) Natural Bond Orbital (NBO) Population Analysis and Non-Linear Optical (NLO) Properties of 2-(Azepan-1-yl(Naphthalen-1-yl)Methyl)Phenol. International Journal of Chemistry and Technology, 4, 138-145. https://doi.org/10.32571/ijct.751001
[23]
N’guessan, N.K., Bamba, K., Patrice, O.W. and Ziao, N. (2018) Theoretical Investigation of Structural and Electronic Properties of Ruthenium Azopyridine Complexes Dyes for Photovoltaic Applications by Using DFT and TD-DFT Methods. European Scientific Journal, ESJ, 14, 424. https://doi.org/10.19044/esj.2018.v14n21p424