Tomato is a crop of major agronomic importance, severely affected by soil-borne diseases such as collar rot caused by Sclerotium rolfsii. This study aimed to evaluate the biocontrol potential of bacterial strains isolated from Opuntia dillenii in Benin against this pathogen. An in-vitro screening identified the most effective antagonistic strains, which were subsequently assessed under greenhouse conditions for their effects on disease incidence and plant growth. Under pathogen pressure, strong variability was observed among the tested strains. In-vitro, Bacillus subtilis S7 and Priestiaflexa S6 showed the highest inhibition potential, with inhibition rates of 100% and 61.77%, respectively. In greenhouse conditions, B. subtilis C7 was the most effective treatment, reducing disease incidence by 80% compared to the inoculated control while maintaining shoot growth (height: 6.0%; number of leaves: 4.0%). In the absence of pathogen pressure, strain-dependent growth-promoting effects were observed. P. flexa C6 exhibited the strongest stimulatory effects on aerial growth, while B. subtilis C7 significantly enhanced root development (16.1%). These results highlight the strong biocontrol potential of selected bacterial strains against S. rolfsii, while also demonstrating their capacity to promote tomato growth under non-stress conditions.Graphical Abstract
References
[1]
Yu, J., Liu, J., Sun, C., Wang, J., Ci, J., Jin, J., et al. (2025) Sensing Technology for Greenhouse Tomato Production: A Systematic Review. SmartAgriculturalTechnology, 11, Article 101020. https://doi.org/10.1016/j.atech.2025.101020
[2]
Rakhalaru, P., Mampholo, B.M., Mamphogoro, T.P. and Thantsha, M.S. (2025) Endophytic and Epiphytic Microorganisms as Biocontrol Agents: Mechanisms, Applications, and Metagenomic Approaches in Tomato Cultivation. Molecules, 30, Article 3816. https://doi.org/10.3390/molecules30183816
[3]
Sultana, F. and Hossain, M.M. (2022) Assessing the Potentials of Bacterial Antagonists for Plant Growth Promotion, Nutrient Acquisition, and Biological Control of Southern Blight Disease in Tomato. PLOSONE, 17, e0267253. https://doi.org/10.1371/journal.pone.0267253
[4]
Coulibaly, A.-E., Pakora, G.A., Ako, A.B.A., Amari, G.E.L.D., N’Guessan, C.A., Kouabenan, A., et al. (2022) Diversity of Sclerotium rolfsii Antagonist Fungi Isolated from Soils of the Rhizosphere of Tomato Crops and Identification of Some Antifungal Compounds. Heliyon, 8, e08943. https://doi.org/10.1016/j.heliyon.2022.e08943
[5]
Ayed, F., Aydi Ben Abdallah, R., Ben Khedher, S., Jabnoun-Khiareddine, H. and Daami-Remadi, M. (2025) Biocontrol of Agroathelia Rolfsii Associated with Stem Rot Disease in Tomato (Solanum lycopersicum L.) and Growth Promotion Using Compost-Associated Actinobacteria. Brazilian Journal of Microbiology, 56, 1203-1218. https://doi.org/10.1007/s42770-025-01647-4
[6]
Triantafyllou, A., Kamou, N., Papadopoulou, A., Leontidou, K., Mellidou, I. and Karamanoli, K. (2023) Evaluation of the Biocontrol Potential of PGPB Strains Isolated from Drought-Tolerant Tomatoes against Fungal Pathogens. Journal of Plant Pathology, 105, 1013-1029. https://doi.org/10.1007/s42161-023-01422-0
[7]
Ahmad, Z., Wu, J., Chen, L. and Dong, W. (2017) Isolated Bacillus Subtilis Strain 330-2 and Its Antagonistic Genes Identified by the Removing PCR. Scientific Reports, 7, Article No. 1777. https://doi.org/10.1038/s41598-017-01940-9
[8]
Andreozzi, A., Prieto, P., Mercado‐Blanco, J., Monaco, S., Zampieri, E., Romano, S., et al. (2019) Efficient Colonization of the Endophytes Herbaspirillumhuttiense RCA24 and Enterobacter cloacae RCA25 Influences the Physiological Parameters of Oryza sativa L. Cv. Baldo Rice. Environmental Microbiology, 21, 3489-3504. https://doi.org/10.1111/1462-2920.14688
[9]
Krause, A., Julich, H., Mankar, M. and Reinhold-Hurek, B. (2017) The Regulatory Network Controlling Ethanol-Induced Expression of Alcohol Dehydrogenase in the Endophyte Azoarcus Sp. Strain Bh72. Molecular Plant-Microbe Interactions?, 30, 778-785. https://doi.org/10.1094/mpmi-01-17-0013-r
[10]
Ludue?a, L.M., Anzuay, M.S., Angelini, J.G., McIntosh, M., Becker, A., Rupp, O., et al. (2019) Genome Sequence of the Endophytic Strain Enterobacter Sp. J49, a Potential Biofertilizer for Peanut and Maize. Genomics, 111, 913-920. https://doi.org/10.1016/j.ygeno.2018.05.021
[11]
Mametja, N.M., Ramadwa, T.E., Managa, M. and Masebe, T.M. (2025) Recent Advances and Developments in Bacterial Endophyte Identification and Application: A 20-Year Landscape Review. Plants, 14, Article 2506. https://doi.org/10.3390/plants14162506
[12]
Pacome, A.N., Nadege, A.A., Emma, W.G., Hafiz, A.S., Farid, B., Adolphe, A., et al. (2015) Metabolic and Biofungicidal Properties of Maize Rhizobacteria for Growth Promotion and Plant Disease Resistance. African Journal of Biotechnology, 14, 811-819. https://doi.org/10.5897/ajb2014.14132
[13]
Passari, A.K., Upadhyaya, K., Singh, G., Abdel-Azeem, A.M., Thankappan, S., Uthandi, S., et al. (2019) Enhancement of Disease Resistance, Growth Potential, and Photosynthesis in Tomato (Solanum lycopersicum) by Inoculation with an Endophytic Actinobacterium, Streptomyces Thermocarboxydus Strain Bpsac147. PLOS ONE, 14, e0219014. https://doi.org/10.1371/journal.pone.0219014
[14]
Saranraj, P., Sayyed, R.Z., Kokila, M., Salomi, V., Sivasakthivelan, P., Manigandan, M., et al. (2023) Evolving Concepts of Biocontrol of Phytopathogens by Endophytic Pseudomonas fluorescence. In: Mawar, R., Sayyed, R.Z., Sharma, S.K. and Sattiraju, K.S., Eds., Plant Growth Promoting Microorganisms of Arid Region, Springer, 365-388. https://doi.org/10.1007/978-981-19-4124-5_17
[15]
Tavares, M.J., Nascimento, F.X., Glick, B.R. and Rossi, M.J. (2018) The Expression of an Exogenous ACC Deaminase by the Endophyte Serratia grimesii Bxf1 Promotes the Early Nodulation and Growth of Common Bean. Letters in Applied Microbiology, 66, 252-259. https://doi.org/10.1111/lam.12847
[16]
Dobrzyński, J. and Nazi?b?o, A. (2024) Paenibacillus as a Biocontrol Agent for Fungal Phytopathogens: Is P. Polymyxa the Only One Worth Attention? Microbial Ecology, 87, Article No. 134. https://doi.org/10.1007/s00248-024-02450-8
[17]
Brun, Y.K., Noumavo, A.D.P., Colombet, J., Atchade, E.B., Baba-Moussa, L. and Lefort, F. (2026) Molecular Characterization and PGP Traits of Bacteria Associated with Opuntia Dillenii. Microorganisms, Submitted.
[18]
Bidima, M.G.S., Chtaina, N., Ezzahiri, B. and Guilli, M.E. (2021) Evaluation of the Antagonistic Potential of Bacterial Strains Isolated from Moroccan Soils for the Biological Control of Sclerotium rolfsii Sacc. International Journal of Food Science and Agriculture, 5, 608-616. https://doi.org/10.26855/ijfsa.2021.12.007
[19]
Deva, M., Vittal, R., Basha, S.A., Pushpavalli, S.N.C.V.L. and B, V. (2024) Antagonistic Nodule Endophytic Bacteria Effective against (Sclerotium rolfsii) Causing Stem Rot Disease in Groundnut. Archives of Current Research International, 24, 96-107. https://doi.org/10.9734/acri/2024/v24i9872
[20]
Antoine, B., Kouakou, T., Koffi Gaston, K., Kassi, M., Seydou, T., Cherif, M., Bomisso, L. and Kone, D. (2015) Inhibition de Sclerotium rolfsii Sacc. (Corticiaceae), agent causal de la pourriture du collet de la tige de la tomate (Solanaceae), par Xylopia aethiopica (Dunal) A. Rich (Annonaceae) et Trichoderma sp. European Scientific Journal, 11, 61-85.
[21]
Saberi Riseh, R., Vatankhah, M., Hassanisaadi, M. and Barka, E.A. (2024) Unveiling the Role of Hydrolytic Enzymes from Soil Biocontrol Bacteria in Sustainable Phytopathogen Management. Frontiers in Bioscience-Landmark, 29, Article ID: 105. https://doi.org/10.31083/j.fbl2903105
[22]
Ajuna, H.B., Lim, H., Moon, J., Won, S., Choub, V., Choi, S., et al. (2023) The Prospect of Hydrolytic Enzymes from Bacillus Species in the Biological Control of Pests and Diseases in Forest and Fruit Tree Production. International Journal of Molecular Sciences, 24, Article 16889. https://doi.org/10.3390/ijms242316889
[23]
Meena, P.N., Meena, A.K., Tiwari, R.K., Lal, M.K. and Kumar, R. (2024) Biological Control of Stem Rot of Groundnut Induced by Sclerotium rolfsii Sacc. Pathogens, 13, Article 632. https://doi.org/10.3390/pathogens13080632
[24]
Vamshi, J., Devi, G.U., Somraj, B., Maheswari, T.U., Supriya, K. and Sudini, H.K. (2024) Biocontrol Efficacy of Trichoderma and Bacillus Isolates against Sclerotium rolfsii under in vitro Conditions. Legume Research, 48, 1846-1854. https://doi.org/10.18805/LR-5414
[25]
Jia, S., Song, C., Dong, H., Yang, X., Li, X., Ji, M., et al. (2023) Evaluation of Efficacy and Mechanism of Bacillus Velezensis CB13 for Controlling Peanut Stem Rot Caused by Sclerotium rolfsii. Frontiers in Microbiology, 14, Article ID: 1111965. https://doi.org/10.3389/fmicb.2023.1111965
[26]
Saiyam, D., Dubey, A., Malla, M.A. and Kumar, A. (2024) Lipopeptides from Bacillus: Unveiling Biotechnological Prospects—Sources, Properties, and Diverse Applications. Brazilian Journal of Microbiology, 55, 281-295. https://doi.org/10.1007/s42770-023-01228-3
[27]
Ankitha, K.S., Radha, T.K., Ruqiya, S., Kukreti, A., Aarthi, N., Nanditha, S., et al. (2023) Exploring the Impact of Cyclic Lipopeptides from Bacillus subtilis NBAIR-BSWG1 through in Vitro and in Planta, Studies against Sclerotium rolfsii. Journal of Biological Control, 37, 145-149. https://doi.org/10.18311/jbc/2023/35546
[28]
Jo, H., Lim, K., Ibal, J.C., Kim, M., Kim, H., Baek, C., et al. (2023) Growth Increase in the Herbaceous Plant Centella Asiatica by the Plant Growth-Promoting Rhizobacteria Priestia Megaterium Hyangyak-01. Plants, 12, Article 2398. https://doi.org/10.3390/plants12132398
[29]
Jensen, C.N.G., Pang, J.K.Y., Gottardi, M., Kra?un, S.K., Svendsen, B.A., Nielsen, K.F., et al. (2024) bacillus Subtilis Promotes Plant Phosphorus (P) Acquisition through P Solubilization and Stimulation of Root and Root Hair Growth. Physiologia Plantarum, 176, e14338. https://doi.org/10.1111/ppl.14338
[30]
Yang, J., Duan, G., Li, C., Liu, L., Han, G., Zhang, Y., et al. (2019) The Crosstalks between Jasmonic Acid and Other Plant Hormone Signaling Highlight the Involvement of Jasmonic Acid as a Core Component in Plant Response to Biotic and Abiotic Stresses. Frontiers in Plant Science, 10, Article ID: 1349. https://doi.org/10.3389/fpls.2019.01349
[31]
Figueroa-Macías, J.P., García, Y.C., Nú?ez, M., Díaz, K., Olea, A.F. and Espinoza, L. (2021) Plant Growth-Defense Trade-Offs: Molecular Processes Leading to Physiological Changes. International Journal of Molecular Sciences, 22, Article 693. https://doi.org/10.3390/ijms22020693
[32]
Liu, Y., Sun, X., Lai, J., Wei, S., Sheng, Y., Zhang, Y., et al. (2026) Research Progress on Rhizosphere Microbiota for Controlling Soil-Borne Diseases: Mechanisms, Applications, and Challenges. Microorganisms, 14, Article 900. https://doi.org/10.3390/microorganisms14040900
[33]
Andargie, Y.E., Lee, G., Jeong, M., Tagele, S.B. and Shin, J. (2023) Deciphering Key Factors in Pathogen-Suppressive Microbiome Assembly in the Rhizosphere. Frontiers in Plant Science, 14, Article ID: 1301698. https://doi.org/10.3389/fpls.2023.1301698
[34]
Jiao, X., Takishita, Y., Zhou, G. and Smith, D.L. (2021) Plant Associated Rhizobacteria for Biocontrol and Plant Growth Enhancement. Frontiers in Plant Science, 12, Article ID: 634796. https://doi.org/10.3389/fpls.2021.634796
[35]
Serr?o, C.P., Ortega, J.C.G., Rodrigues, P.C. and de Souza, C.R.B. (2024) Bacillus Species as Tools for Biocontrol of Plant Diseases: A Meta-Analysis of Twenty-Two Years of Research, 2000-2021. World Journal of Microbiology and Biotechnology, 40, Article No. 110. https://doi.org/10.1007/s11274-024-03935-x
[36]
Ramírez-Pool, J.A., Calderón-Pérez, B., Ruiz-Medrano, R., Ortiz-Castro, R. and Xoconostle-Cazares, B. (2024) Bacillus Strains as Effective Biocontrol Agents against Phytopathogenic Bacteria and Promoters of Plant Growth. Microbial Ecology, 87, Article No. 76. https://doi.org/10.1007/s00248-024-02384-1
[37]
Charron‐Lamoureux, V., Lebel‐Beaucage, S., Pomerleau, M. and Beauregard, P.B. (2024) Rooting for Success: Evolutionary Enhancement of Bacillus for Superior Plant Colonization. Microbial Biotechnology, 17, e70001. https://doi.org/10.1111/1751-7915.70001
[38]
Preston, D.L. and Sauer, E.L. (2020) Infection Pathology and Competition Mediate Host Biomass Overcompensation from Disease. Ecology, 101, e03000. https://doi.org/10.1002/ecy.3000
[39]
Rivera-Vega, L.J., Grunseich, J.M., Aguirre, N.M., Valencia, C.U., Sword, G.A. and Helms, A.M. (2022) A Beneficial Plant-Associated Fungus Shifts the Balance toward Plant Growth over Resistance, Increasing Cucumber Tolerance to Root Herbivory. Plants, 11, Article 282. https://doi.org/10.3390/plants11030282
[40]
Adjei, M.O., Yu, R., Cao, X. and Fan, B. (2025) The Mechanisms of Bacillus Subtilis as a Plant-Beneficial Rhizobacterium in Plant-Microbe Interactions. Microorganisms, 13, Article 2823. https://doi.org/10.3390/microorganisms13122823
[41]
Gayithri, M., Singh, S., Pradhan, B., Boorla, V. and Chand, S. (2026) Multifunctional Roles of Bacillus Spp. in Sustainable Agriculture: Advances in Biocontrol, Omics, and Ecological Applications. Microbial Ecology, 89, Article No. 55. https://doi.org/10.1007/s00248-026-02709-2
[42]
Flemming, H. and Wingender, J. (2010) The Biofilm Matrix. Nature Reviews Microbiology, 8, 623-633. https://doi.org/10.1038/nrmicro2415
[43]
Yang, L., Qian, X., Zhao, Z., Wang, Y., Ding, G. and Xing, X. (2024) Mechanisms of Rhizosphere Plant-Microbe Interactions: Molecular Insights into Microbial Colonization. Frontiers in Plant Science, 15, Article ID: 1491495. https://doi.org/10.3389/fpls.2024.1491495
[44]
Zhang, M., Wu, Y., Qu, C., Huang, Q. and Cai, P. (2024) Microbial Extracellular Polymeric Substances (EPS) in Soil: From Interfacial Behaviour to Ecological Multifunctionality. Geo-Bio Interfaces, 1, e4. https://doi.org/10.1180/gbi.2024.4