全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

Dissecting Multiple Arabidopsis CC-NBS-LRR Proteins Structure and Localization

DOI: 10.4236/jbm.2024.127008, PP. 87-99

Keywords: Arabidopsis, Calcium Permeation Channel, Pentamer, Plasma Membrane

Full-Text   Cite this paper   Add to My Lib

Abstract:

NBS-LRR (nucleotide binding sites and leucine rich repeat) protein plays a crucial role as sentries and as defense activators in plants. The structure and function of NBS-LRR proteins are closely related. Previous articles have announced that the activated ZAR1 (HopZ-Activated Resistance 1) forms a pentamer in the plasma membrane, which is a calcium permeable channel that can trigger plant immune signaling and cell death. However, the structure of galore NBS-LRRs in Arabidopsis is not yet clear. The functional sites of distinct NBS-LRR in cells may vary. In addition, identifying pathogens and activating defense regions may occur in different subcellular compartments. Therefore, dissecting the specific structure and positioning of NBS-LRRs is an indispensable step in understanding their functions. In this article, we exploit AlphaFold to predict the structure of some designed NBS-LRRs, and utilize Agroinfiltration transient expression system, combined with biochemical fractionation, to dissect the localization of these NBS-LRR receptors from Arabidopsis. Structural data indicates that the identified NBS-LRRs share analogous conformation. Membrane fractionation assay demonstrates these NBS-LRRs are mainly associated with the membrane. These data show that the Ca2+-permeable channel activity may be evolutionarily conserved in NBS-LRR of Arabidopsis, and this study provides some reference clues for analyzing the structure and localization patterns of other plant immune receptors.

References

[1]  Jones, J.D.G. and Dangl, J.L. (2006) The Plant Immune System. Nature, 444, 323-329.
https://doi.org/10.1038/nature05286

[2]  Dangl, J.L. and Jones, J.D.G. (2001) Plant Pathogens and Integrated Defence Responses to Infection. Nature, 411, 826-833.
https://doi.org/10.1038/35081161

[3]  Ngou, B.P.M., Ahn, H., Ding, P. and Jones, J.D.G. (2021) Mutual Potentiation of Plant Immunity by Cell-Surface and Intracellular Receptors. Nature, 592, 110-115.
https://doi.org/10.1038/s41586-021-03315-7

[4]  Yuan, M., Jiang, Z., Bi, G., Nomura, K., Liu, M., Wang, Y., et al. (2021) Pattern-recognition Receptors Are Required for NLR-Mediated Plant Immunity. Nature, 592, 105-109.
https://doi.org/10.1038/s41586-021-03316-6

[5]  Takken, F.L. and Goverse, A. (2012) How to Build a Pathogen Detector: Structural Basis of NB-LRR Function. Current Opinion in Plant Biology, 15, 375-384.
https://doi.org/10.1016/j.pbi.2012.05.001

[6]  Coll, N.S., Epple, P. and Dangl, J.L. (2011) Programmed Cell Death in the Plant Immune System. Cell Death & Differentiation, 18, 1247-1256.
https://doi.org/10.1038/cdd.2011.37

[7]  Balint-Kurti, P. (2019) The Plant Hypersensitive Response: Concepts, Control and Consequences. Molecular Plant Pathology, 20, 1163-1178.
https://doi.org/10.1111/mpp.12821

[8]  Wang, J., Song, W. and Chai, J. (2023) Structure, Biochemical Function, and Signaling Mechanism of Plant NLRs. Molecular Plant, 16, 75-95.
https://doi.org/10.1016/j.molp.2022.11.011

[9]  Jones, J.D.G., Vance, R.E. and Dangl, J.L. (2016) Intracellular Innate Immune Surveillance Devices in Plants and Animals. Science, 354, aaf6395.
https://doi.org/10.1126/science.aaf6395

[10]  Huang, J., Wu, X., Sun, K. and Gao, Z. (2021) Structure and Function Analysis of a CC-NBS-LRR Protein AT1G12290. Biochemical and Biophysical Research Communications, 534, 206-211.
https://doi.org/10.1016/j.bbrc.2020.11.111

[11]  Huang, J., Guan, X., Zhong, X., Jia, P., Zhang, H. and Ruan, H. (2024) Structural and Functional Insights into an Arabidopsis NBS-LRR Receptor in Nicotiana benthamiana. American Journal of Molecular Biology, 14, 84-96.
https://doi.org/10.4236/ajmb.2024.142007

[12]  Gao, Z., Chung, E., Eitas, T.K. and Dangl, J.L. (2011) Plant Intracellular Innate Immune Receptor Resistance to pseudomonas Syringae Pv. Maculicola 1 (RPM1) Is Activated At, and Functions On, the Plasma Membrane. Proceedings of the National Academy of Sciences of the United States of America, 108, 7619-7624.
https://doi.org/10.1073/pnas.1104410108

[13]  Burch-Smith, T.M., Schiff, M., Caplan, J.L., Tsao, J., Czymmek, K. and Dinesh-Kumar, S.P. (2007) A Novel Role for the TIR Domain in Association with Pathogen-Derived Elicitors. PLOS Biology, 5, e68.
https://doi.org/10.1371/journal.pbio.0050068

[14]  Shen, Q., Saijo, Y., Mauch, S., Biskup, C., Bieri, S., Keller, B., et al. (2007) Nuclear Activity of MLA Immune Receptors Links Isolate-Specific and Basal Disease-Resistance Responses. Science, 315, 1098-1103.
https://doi.org/10.1126/science.1136372

[15]  Michael Weaver, L., Swiderski, M.R., Li, Y. and Jones, J.D.G. (2006) The Arabidopsis thaliana TIR-NB-LRR R-Protein, RPP1A; Protein Localization and Constitutive Activation of Defence by Truncated Alleles in Tobacco and Arabidopsis. The Plant Journal, 47, 829-840.
https://doi.org/10.1111/j.1365-313x.2006.02834.x

[16]  El Kasmi, F., Chung, E., Anderson, R.G., Li, J., Wan, L., Eitas, T.K., et al. (2017) Signaling from the Plasma-Membrane Localized Plant Immune Receptor RPM1 Requires Self-Association of the Full-Length Protein. Proceedings of the National Academy of Sciences of the United States of America, 114, E7385-E7394.
https://doi.org/10.1073/pnas.1708288114

[17]  Wirthmueller, L., Zhang, Y., Jones, J.D.G. and Parker, J.E. (2007) Nuclear Accumulation of the Arabidopsis Immune Receptor RPS4 Is Necessary for Triggering Eds1-Dependent Defense. Current Biology, 17, 2023-2029.
https://doi.org/10.1016/j.cub.2007.10.042

[18]  Qi, D., DeYoung, B.J. and Innes, R.W. (2012) Structure-function Analysis of the Coiled-Coil and Leucine-Rich Repeat Domains of the RPS5 Disease Resistance Protein. Plant Physiology, 158, 1819-1832.
https://doi.org/10.1104/pp.112.194035

[19]  Césari, S., Kanzaki, H., Fujiwara, T., Bernoux, M., Chalvon, V., Kawano, Y., et al. (2014) The NB-LRR Proteins RGA4 and RGA5 Interact Functionally and Physically to Confer Disease Resistance. The EMBO Journal, 33, 1941-1959.
https://doi.org/10.15252/embj.201487923

[20]  Takemoto, D., Rafiqi, M., Hurley, U., Lawrence, G.J., Bernoux, M., Hardham, A.R., et al. (2012) N-Terminal Motifs in Some Plant Disease Resistance Proteins Function in Membrane Attachment and Contribute to Disease Resistance. Molecular Plant-Microbe Interactions, 25, 379-392.
https://doi.org/10.1094/mpmi-11-10-0272

[21]  Gong, J., Chen, Y., Xu, Y., Gu, M., Ma, H., Hu, X., et al. (2023) Tracking Organelle Activities through Efficient and Stable Root Genetic Transformation System in Woody Plants. Horticulture Research, 11, uhad262.
https://doi.org/10.1093/hr/uhad262

[22]  Wang, J., Hu, M., Wang, J., Qi, J., Han, Z., Wang, G., et al. (2019) Reconstitution and Structure of a Plant NLR Resistosome Conferring Immunity. Science, 364, eaav5870.
https://doi.org/10.1126/science.aav5870

[23]  Ma, S., Lapin, D., Liu, L., Sun, Y., Song, W., Zhang, X., et al. (2020) Direct Pathogen-Induced Assembly of an NLR Immune Receptor Complex to Form a Holoenzyme. Science, 370, eabe3069.
https://doi.org/10.1126/science.abe3069

[24]  Martin, R., Qi, T., Zhang, H., Liu, F., King, M., Toth, C., et al. (2020) Structure of the Activated ROQ1 Resistosome Directly Recognizing the Pathogen Effector XopQ. Science, 370, eabd9993.
https://doi.org/10.1126/science.abd9993

[25]  Förderer, A., Li, E., Lawson, A.W., Deng, Y., Sun, Y., Logemann, E., et al. (2022) A Wheat Resistosome Defines Common Principles of Immune Receptor Channels. Nature, 610, 532-539.
https://doi.org/10.1038/s41586-022-05231-w

[26]  Li, Y., Zhou, M., Hu, Q., Bai, X., Huang, W., Scheres, S.H.W., et al. (2017) Mechanistic Insights into Caspase-9 Activation by the Structure of the Apoptosome Holoenzyme. Proceedings of the National Academy of Sciences of the United States of America, 114, 1542-1547.
https://doi.org/10.1073/pnas.1620626114

[27]  Hu, Z., Zhou, Q., Zhang, C., Fan, S., Cheng, W., Zhao, Y., et al. (2015) Structural and Biochemical Basis for Induced Self-Propagation of NLRC4. Science, 350, 399-404.
https://doi.org/10.1126/science.aac5489

[28]  Saitou, N. and Nei, M. (1987) The Neighbor-Joining Method: A New Method for Reconstructing Phylogenetic Trees. Molecular Biology and Evolution, 4, 406-425.
https://doi.org/10.1093/oxfordjournals.molbev.a040454

[29]  Kumar, S., Stecher, G., Li, M., Knyaz, C. and Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, 35, 1547-1549.
https://doi.org/10.1093/molbev/msy096

[30]  Boisson, B., Giglione, C. and Meinnel, T. (2003) Unexpected Protein Families Including Cell Defense Components Feature in the N-Myristoylome of a Higher Eukaryote. Journal of Biological Chemistry, 278, 43418-43429.
https://doi.org/10.1074/jbc.m307321200

[31]  Huang, J., Jia, P., Zhong, X., Guan, X., Zhang, H. and Gao, Z. (2024) Ectopic Expression of the Arabidopsis Mutant L3 NB-LRR Receptor Gene in Nicotiana Benthamiana Cells Leads to Cell Death. Gene, 906, Article ID: 148256.
https://doi.org/10.1016/j.gene.2024.148256

[32]  Mackey, D., Belkhadir, Y., Alonso, J.M., Ecker, J.R. and Dangl, J.L. (2003) Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance. Cell, 112, 379-389.
https://doi.org/10.1016/s0092-8674(03)00040-0

[33]  Baudin, M., Hassan, J.A., Schreiber, K.J. and Lewis, J.D. (2017) Analysis of the ZAR1 Immune Complex Reveals Determinants for Immunity and Molecular Interactions. Plant Physiology, 174, 2038-2053.
https://doi.org/10.1104/pp.17.00441

[34]  Liefhebber, J.M., Punt, S., Spaan, W.J. and van Leeuwen, H.C. (2010) The Human Collagen β(1-O)galactosyltransferase, GLT25D1, Is a Soluble Endoplasmic Reticulum Localized Protein. BMC Cell Biology, 11, Article No. 33.
https://doi.org/10.1186/1471-2121-11-33

[35]  David Gerecht, P.S., Taylor, M.A. and Port, J.D. (2010) Intracellular Localization and Interaction of Mrna Binding Proteins as Detected by Fret. BMC Cell Biology, 11, Article No. 69.
https://doi.org/10.1186/1471-2121-11-69

[36]  Pasha, T., Zatorska, A., Sharipov, D., Rogelj, B., Hortobágyi, T. and Hirth, F. (2021) Karyopherin Abnormalities in Neurodegenerative Proteinopathies. Brain, 144, 2915-2932.
https://doi.org/10.1093/brain/awab201

[37]  Seiler Vellame, D., Castanho, I., Dahir, A., Mill, J. and Hannon, E. (2021) Characterizing the Properties of Bisulfite Sequencing Data: Maximizing Power and Sensitivity to Identify Between-Group Differences in DNA Methylation. BMC Genomics, 22, Article No. 446.
https://doi.org/10.1186/s12864-021-07721-z

[38]  Bi, G., Su, M., Li, N., Liang, Y., Dang, S., Xu, J., et al. (2021) The ZAR1 Resistosome Is a Calcium-Permeable Channel Triggering Plant Immune Signaling. Cell, 184, 3528-3541.E12.
https://doi.org/10.1016/j.cell.2021.05.003

[39]  Cressman, D.E., Chin, K., Taxman, D.J. and Ting, J.P. (1999) A Defect in the Nuclear Translocation of CIITA Causes a Form of Type II Bare Lymphocyte Syndrome. Immunity, 10, 163-171.
https://doi.org/10.1016/s1074-7613(00)80017-5

[40]  Lé;cine, P., Esmiol, S., Mé;tais, J., Nicoletti, C., Nourry, C., McDonald, C., et al. (2007) The NOD2-RICK Complex Signals from the Plasma Membrane. Journal of Biological Chemistry, 282, 15197-15207.
https://doi.org/10.1074/jbc.m606242200

[41]  Travassos, L.H., Carneiro, L.A.M., Ramjeet, M., Hussey, S., Kim, Y., Magalhães, J.G., et al. (2009) Nod1 and Nod2 Direct Autophagy by Recruiting ATG16L1 to the Plasma Membrane at the Site of Bacterial Entry. Nature Immunology, 11, 55-62.
https://doi.org/10.1038/ni.1823

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133