Hypericum monogynum L. is an
important medicinal and ornamental plant which belongs to the genus Hypericum in the Guttiferae family. The partial chloroplast genome sequence of H.
monogynum has been presented in this study. The assembled partial
chloroplast genome (cpDNA) was 120,005 bp in size, with an overall 36.96% GC
content. It is 70 genes that are included in the chloroplast genome of Hypericum
monogynum in this study, which are consisted of 33 protein-coding genes, 30
transfer RNA genes, as well as 7 ribosomal RNA genes. Phylogenetic analysis
with the reported chloroplast genomes revealed that Hypericum monogynum is separated to other species in Guttiferae family, and it might well function
as an external group of Guttiferae family.
References
[1]
Judd, W.S., Campbell, C.S., Kellogg, E.A., Stevens, P.F. and Donoghue M.J. (2016) Plant Systematics: A Phylogenetic Approach. Sinauer Associates, Inc., Sunderland.
[2]
Zeng, Y.R., Wang, L.P., Hu, ZX., Yi, P., Yang, W.X., Gu, W., Huang, L.J., Yuan, C.M. and Hao, X.J. (2018) Chromanopyrones and a Flavone from Hypericum monogynum. Fitoterapia, 125, 59-64. https://doi.org/10.1016/j.fitote.2017.12.013
[3]
Zeng, Y.R., Li, Y.N., Lou, H.Y., Jian, J.Y., Gu, W., Huang, L.J., Du, G.H., Yuan, C.M. and Hao, X.J. (2021) Polycyclic Polyprenylated Acylphloroglucinol Derivatives with Neuroprotective Effects from Hypericum monogynum. Journal of Asian Natural Products Research, 23, 73-81. https://doi.org/10.1080/10286020.2019.1698551
[4]
Gao, W., Hu, J.W., Hou, W.Z., Xu, F., Sun, H., Xing, J.G., Peng, Y., Wang, X.L., Ji, T.F., Li, L. and Gu, Z.Y. (2016) Four New Prenylated Phloroglucinol Derivatives from Hypericum scabrum. Tetrahedron Letters, 57, 2244-2248.
https://doi.org/10.1016/j.tetlet.2016.04.026
[5]
Pan, Y.H., Guo B.L. and Peng, Y. (1993) Current Situation and Utilization Prospect of Medicinal Plant Resources of Hypericum in China (In Chinese). Chinese Materia Medica, 16, 14-18.
[6]
Xi, Q.N., Lin, K.H. and Wei, J.H. (2007) Advances on chemical investigation of Hypericum (In Chinese). Journal of Natural Product Research and Development, 19, 344-355.
[7]
Meseguer, A.S., Aldasoro, J.J. and Sanmartin, I. (2013) Bayesian Inference of Phylogeny, Morphology and Range Evolution Reveals a Complex Evolutionary History in St. John’s Wort (Hypericum). Molecular Phylogenetics and Evolution, 67, 379-403. https://doi.org/10.1016/j.ympev.2013.02.007
[8]
Zerbino, D.R. and Birney, E. (2008) Velvet: Algorithms for de novo Short Read Assembly Using de Bruijn Graphs. Genome Research, 18, 821-829.
https://doi.org/10.1101/gr.074492.107
[9]
Marten, B., Christiaan, V.H., Hans, J.J., Derek, B. and Walter, P. (2011) Scaffolding Pre-Assembled Contigs Using SSPACE. Bioinformatics, 27, 578-579.
https://doi.org/10.1093/bioinformatics/btq683
[10]
Boetzer, M. and Pirovano, W. (2012) Toward Almost Closed Genomes with Gapfiller. Genome Biology, 13, Article No. R56. https://doi.org/10.1186/gb-2012-13-6-r56
[11]
Hyatt, D., Chen, G.L., Locascio, P.F., Land, M.L., Larimer, F.W. and Hauser, L.J. (2010) Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification. BMC Bioinformatics, 11, Article No. 119.
https://doi.org/10.1186/1471-2105-11-119
[12]
Nawrocki, E.P., Burge, S.W., Bateman, A., Daub, J., Eberhardt, R.Y., Eddy, S.R., Floden, E.W., Gardner, P.P., Jones, T.A., Tate, J. and Finn, R.D. (2015) Rfam 12.0: Updates to the RNA Families Database. Nucleic Acids Research, 43, 130-137.
https://doi.org/10.1093/nar/gku1063