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-  2017 

Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

DOI: 10.1186/s13007-017-0159-5

Keywords: MeSH, Maize, Gene ontology (GO), Overrepresentation analysis (ORA), Domestication, Ear number, Seed size, Inflorescence

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Abstract:

High-density marker panels and/or whole-genome sequencing, coupled with advanced phenotyping pipelines and sophisticated statistical methods, have dramatically increased our ability to generate lists of candidate genes or regions that are putatively associated with phenotypes or processes of interest. However, the speed with which we can validate genes, or even make reasonable biological interpretations about the principles underlying them, has not kept pace. A promising approach that runs parallel to explicitly validating individual genes is analyzing a set of genes together and assessing the biological similarities among them. This is often achieved via gene ontology analysis, a powerful tool that involves evaluating publicly available gene annotations. However, additional resources such as Medical Subject Headings (MeSH) can also be used to evaluate sets of genes to make biological interpretations

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