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OALib Journal期刊
ISSN: 2333-9721
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-  2019 

External memory BWT and LCP computation for sequence collections with applications

DOI: 10.1186/s13015-019-0140-0

Keywords: Burrows–Wheeler Transform, Longest common prefix array, Maximal repeats, All pairs suffix–prefix overlaps, Succinct de Bruijn graph, External memory algorithms

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Abstract:

LCP array and BWT for s 1 = abcab $ 1 and s 2 = aabcabc $ 2 , and multi-string BWT and corresponding LCP array for the same strings. Column id shows, for each entry of bwt 12 = bc $ 2 cc $ 1 aaaabbb whether it comes from s 1 or s

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