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-  2017 

An efficient algorithm for testing the compatibility of phylogenies with nested taxa

DOI: 10.1186/s13015-017-0099-7

Keywords: Algorithms, Phylogenetics, Supertrees, Taxonomies

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Abstract:

Semi-labeled trees generalize ordinary phylogenetic trees, allowing internal nodes to be labeled by higher-order taxa. Taxonomies are examples of semi-labeled trees. Suppose we are given collection ?? of semi-labeled trees over various subsets of a set of taxa. The ancestral compatibility problem asks whether there is a semi-labeled tree that respects the clusterings and the ancestor/descendant relationships implied by the trees in ??. The running time and space usage of the best previous algorithm for testing ancestral compatibility depend on the degrees of the nodes in the trees in ??

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