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ISSN: 2333-9721
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-  2017 

Biologically feasible gene trees, reconciliation maps and informative triples

DOI: 10.1186/s13015-017-0114-z

Keywords: DTL-scenario, Reconciliation, Horizontal gene transfer, Phylogenetic tree, Triples, Event-label

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Abstract:

The history of gene families—which are equivalent to event-labeled gene trees—can be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes. The question then arises as whether inferred event-labeled gene trees are biologically feasible, that is, if there is a possible true history that would explain a given gene tree. In practice, this problem is boiled down to finding a reconciliation map—also known as DTL-scenario—between the event-labeled gene trees and a (possibly unknown) species tree

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