全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

细菌dietziasp.dq12-45-1b中两种长链烷烃羟化酶基因的鉴定

DOI: 10.3724/SP.J.1145.2015.04039, PP. 813-818

Keywords: dietziasp.,长链烷烃,alma,lada,生物降解

Full-Text   Cite this paper   Add to My Lib

Abstract:

细菌dietziasp.dq12-45-1b是一株高效石油降解菌,从中已经鉴定了编码膜整合烷烃羟化酶(alkb)和细胞色素p450类cyp153烷烃羟化酶的基因alkw1和cyp153,该菌能产生不同的表面活性剂以降解不同碳链长度的烷烃,但在不同时期对不同碳源进行降解的机制仍不清楚.通过以二十八烷(c28)为单一碳源培养alkw1缺陷的突变株m5-5,发现alkw1缺陷降低了菌株对c28的降解能力,但仍具有降解c28的能力.通过对dq12-45-1b菌株全基因组信息分析,并运用实时荧光定量pcr(real-timepcr)技术,鉴定了两种长链烷烃羟化酶基因,其中g1的氨基酸序列与acinetobactersp.dsm17874alma的相似性是50%,g2的氨基酸序列与geobacillusthermodenitrificansng80-2lada的相似性是48%.同时,发现dietziasp.e1存在基因g1的同源基因(g1α)和g2的同源基因(g2α和g2β),其中基因g1α与g1的相似性是71%,基因g2α、g2β与g2的相似性分别是34%、87%.real-timepcr分析表明,在dietziasp.dq12-45-1b及突变株m5-5中,基因g1和g2的转录水平均因c28的诱导而显著上调.上述对alma和lada同源基因的鉴定表明,dietziasp.dq12-45-1b具有独特的烷烃降解多酶体系,是目前报道的烷烃羟化酶最多的细菌之一.

References

[1]  5lip,wangl,fengl.characterizationofanovelrieske-typealkanemonooxygenasesysteminpusillimonassp.straint7-7[j].jbacteriol,2013,195(9):1892-1901
[2]  6fengl,wangw,chengj,reny,zhaog,gaoc,tangy,liux,hanw,pengx,liur,wangl.genomeandproteomeoflong-chainalkanedegradinggeobacillusthermodenitrificansng80-2isolatedfromadeep-subsurfaceoilreservoir[j].pnas,2007,104(13):5602-5607
[3]  12bihariz,szvetnika,szaboz,blastyaka,zomboriz,balazsm,kissi.functionalanalysisoflong-chainn-alkanedegradationbydietziaspp.[j].femsmicrobiollett,2011,316(2):100-107
[4]  13liuc,wangw,wuy,zhouz,laiq,shaoz.multiplealkanehydroxylasesystemsinamarinealkanedegrader,alcanivoraxdieseloleib-5[j].environmicrobiol,2011,13(5):1168-1178
[5]  14wangw,shaoz.genesinvolvedinalkanedegradationinthealcanivoraxhongdengensisstraina-11-3[j].applmicrobiolbiotechnol,2012,94(2):437-448
[6]  15kumars,neim,dudleyj,tamurak.mega:abiologist-centricsoftwareforevolutionaryanalysisofdnaandproteinsequences[j].briefbioinform,2008,9(4):299-306
[7]  17livakkj,schmittgentd.analysisofrelativegeneexpressiondatausingreal-timequantitativepcrandthe2-δδctmethod[j].methods,2001,25(4):402-408
[8]  19bihariz,szabóz,szvetnika,balázsm,bartosp,tolmacsovp,zomboriz,kissi.characterizationofanovellong-chainn-alkane-degradingdietziasp.e1[j].znaturforschc,2010,65(11-12):693-700
[9]  20bustinsa,benesv,garsonja,hellemansj,huggettj,kubistam,muellerr,nolant,pfafflmw,shipleygl,vandesompelej,wittwerct.themiqeguidelines:minimuminformationforpublicationofquantitativereal-timepcrexperiments[j].clinchem,2009,55(4):611-622
[10]  21smitsthm,baladasb,witholtb,beilenjbv.functionalanalysisofalkanehydroxylasesfromgram-negativeandgram-positivebacteria[j].jbacteriol,2002,184(6):1733-1742
[11]  22haasd,blumerc,keelc.biocontrolabilityoffluorescentpseudomonadsgeneticallydissected:importanceofpositivefeedbackregulation[j].curropinbiotechnol,2000,11(3):290-297
[12]  1vanbeilenjb,liz,duetzwa,smitsth,witholtb.diversityofalkanehydroxylasesystemsintheenvironment[j].oilgasscitechnol,2003,58(4):427-440
[13]  2merkxm,koppda,sazinskymh,blazykjl,müllerj,lippardsj.dioxygenactivationandmethanehydroxylationbysolublemethanemonooxygenase:ataleoftwoironsandthreeproteins[j].angewcheminted,2001,40(15):2782-2807
[14]  3funhoffeg,vanbeilenjb.alkaneactivationbyp450oxygenases[j].biocatalbiotransform,2007,25(2-4):186-193
[15]  4vanbeilenjb,wubboltsmg,witholtb.geneticsofalkaneoxidationbypseudomonasoleovorans[j].biodegradation,1994,5(3-4):161-174
[16]  7throne-holstm,wentzela,ellingsente,kotlarhk,zotchevsb.identificationofnovelgenesinvolvedinlong-chainn-alkanedegradationbyacinetobactersp.straindsm17874[j].applenvironmicrobiol,2007,73(10):3327-3332
[17]  8niey,liangjl,fangh,tangyq,wuxl.characterizationofacyp153alkanehydroxylasegeneinagram-positivedietziasp.dq12-45-1bandits“teamrole”withalkw1inalkanedegradation[j].applmicrobiolbiotechnol,2014,98(1):163-173
[18]  9niey,liangjl,fangh,tangyq,wuxl.twonovelalkanehydroxylase-rubredoxinfusiongenesisolatedfromadietziabacteriumandthefunctionsoffusedrubredoxindomainsinlong-chainn-alkanedegradation[j].applenvironmicrobiol,2011,77(20):7279-7288
[19]  10wangxb,chicq,niey,tangyq,tany,wug,wuxl.degradationofpetroleumhydrocarbons(c6-c40)andcrudeoilbyanoveldietziastrain[j].bioresourtechnol,2011,102(17):7755-7761
[20]  11wangxb,niey,tangyq,wug,wuxl.n-alkanechainlengthaltersdietziasp.straindq12-45-1bbiosurfactantproductionandcellsurfaceactivity[j].applenvironmicrobiol,2013,79(1):400-402
[21]  16niey,fangh,liy,chic,tangy,wux.thegenomeofthemoderatehalophileamycolicicoccussubflavusdqs3-9a1trevealsfouralkanehydroxylationsystemsandprovidessomecluesonthegeneticbasisforitsadaptationtoapetroleumenvironment[j].plosone,2013,8(8):e70986
[22]  18norusism.spss16.0statisticalprocedurescompanion[m].usa:prenticehallpress,2008

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133