全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

植物长链非编码RNA功能研究进展

DOI: 10.13560/j.cnki.biotech.bull.1985.2015.06.001, PP. 1-7

Keywords: 植物lncRNA,生物学功能,研究方法,miRNA

Full-Text   Cite this paper   Add to My Lib

Abstract:

长链非编码RNA(longnon-codingRNA,lncRNA)是新近发现的基因表达调控因子,其广泛参与植物生长发育过程的调节,并可对环境胁迫作出响应。就lncRNA的产生与分类方法、植物中已报道的lncRNA及其对植物不同器官发育过程的影响、lncRNA与小RNA的关系、有关lncRNA的研究方法及目前研究中面临的问题进行了介绍。

References

[1]  陈润生. 非编码 RNA[J]. Progress in Biochemistry and Biophy-sics, 2013, 40(7):591-592.
[2]  Bai Y, Dai X, Harrison AP, Chen M. RNA regulatory networks in animals and plants:a long noncoding RNA perspective[J]. Briefings in Functional Genomics, 2015, 14(2):91-101.
[3]  Dieci G, Fiorino G, Castelnuovo M, et al. The expanding RNA poly-merase III transcriptome[J]. Trends Genet, 2007, 23:614-622.
[4]  Managadze D, Rogozin IB, Chernikova D, et al. Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs[J]. Genome Biol Evol, 2011, 3:1390-1404.
[5]  谢兆辉. 天然反义转录物及其调控基因的表达机制[J]. 遗传, 2010, 32(2):122-128.
[6]  Yin Y, Zhao Y, Wang J, et al. antiCODE:a natural sense-antisense transcripts database[J]. BMC Bioinformatics, 2007, 8:319.
[7]  Lapidot M, Pilpel Y. Genome-wide natural antisense transcription:coupling its regulation to its different regulatory mechanisms[J]. EMBO Reports, 2006, 7(12):1216-1222.
[8]  夏天, 肖丙秀, 郭俊明. 长链非编码 RNA 的作用机制及其研究方法[J]. 遗传, 2013, 35(3):269-280.
[9]  De Lucia F, Dean C. Long non-coding RNAs and chromatin regula-tion[J]. Curr Opin Plant Biol, 2011, 14(2):168-173.
[10]  Ponjavic J, Ponting CP, Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs[J]. Genome Research, 2007, 17(5):556-565.
[11]  Liu J, Jung C, Xu J, et al. Genome-wide analysis uncovers regula-tion of long intergenic noncoding RNAs in Arabidopsis[J]. The Plant Cell Online, 2012, 24(11):4333-4345.
[12]  Boerner S, McGinnis KM. Computational identification and functional predictions of long noncoding RNA in Zea mays[J]. PloS One, 2012, 7(8):e43047.
[13]  Swiezewski S, Liu F, Magusin A, et al. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target[J]. Nature, 2009, 462(7274):799-802.
[14]  Zhou H, Liu Q, Li J, et al. Photoperiod-and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA[J]. Cell Research, 2012, 22(4):649-660.
[15]  Dai XY, Yu JJ, Zhao Q, et al. Non-coding RNA for ZM401, a pollen-specific gene of Zea mays[J]. Acta Botanica Sinica-English Edition, 2004, 46(4):497-504.
[16]  Xin M, Wang Y, Yao Y, et al. Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing[J]. BMC Plant Biology, 2011, 11(1):61.
[17]  Amor BB, Wirth S, Merchan F, et al. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses[J]. Genome Research, 2009, 19(1):57-69.
[18]  Heo JB, Sung S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA[J]. Science, 2011, 331(6013):76-79.
[19]  Franco-Zorrilla JM, Valli A, Todesco M, et al. Target mimicry provides a new mechanism for regulation of microRNA activity[J]. Nature Genetics, 2007, 39(8):1033-1037.
[20]  Jabnoune M, Secco D, Lecampion C, et al. A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness[J]. The Plant Cell Online, 2013, 25(10):4166-4182.
[21]  Hirsch J, Lefort V, Vankersschaver M, et al. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts[J]. Plant Physiology, 2006, 140(4):1192-1204.
[22]  Kim TK, Hemberg M, Gray JM, et al. Widespread transcription at neuronal activity-regulated enhancers[J]. Nature, 2010, 465(7295):182-187.
[23]  Tsai MC, Manor O, Wan Y, et al. Long noncoding RNA as modular scaffold of histone modification complexes[J]. Science, 2010, 329(5992):689-693.
[24]  Qi X,Xie S,Liu Y, et al. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response tosimulated drought stress by deep sequencing[J]. Plant Mol Biol,2013,83(4-5):459-473.
[25]  Hall Q, Cannon MC. The cell wall hydroxyproline-rich glycoprotein RSH is essential for normal embryo development in Arabidopsis[J]. Plant Cell, 2002, 14(5):1161-1172.
[26]  Carrieri C, Cimatti L, Biagioli M, et al. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat[J]. Nature, 2012, 491(7424):454-457.
[27]  Matsui A, Ishida J, Morosawa T, et al. Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array[J]. Plant and Cell Physiology, 2008, 49(8):1135-1149.
[28]  Esteller M. Non-coding RNAs in human disease[J]. Nature Reviews Genetics, 2011, 12(12):861-874.
[29]  Wu J, Okada T, Fukushima T, et al. A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis[J]. RNA Biol, 2012, 9:302-313.
[30]  Moran VA, Perera RJ, Khalil AM. Emerging functional and mechan-istic paradigms of mammalian long non-coding RNAs[J]. Nucleic Acids Research, 2012, 40(14):6391-6400.
[31]  Chen D, Yuan C, Zhang J, et al. PlantNATsDB:a comprehensive database of plant natural antisense transcripts[J]. Nucleic Acids Research, 2012, 40(D1):D1187-D1193.
[32]  Prasanth KV, Spector DL. Eukaryotic regulatory RNAs:an answer to the ‘genome complexity’conundrum[J]. Genes & Development, 2007, 21(1):11-42.
[33]  Lindsey S, Raghavendra C, Sivalingam KM. Data gathering algorithms in sensor networks using energy metrics[J]. IEEE Transactions on Parallel and Distributed Systems, 2002, 13(9):924-935.
[34]  李灵, 宋旭. 长链非编码RNA在生物体中的调控作用[J]. 遗传, 2014, 36(3):228-236.
[35]  Tripathi V, Ellis JD, Shen Z, et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation[J]. Molecular Cell, 2010, 39(6):925-938.
[36]  Ponting CP, Oliver PL, Reik W. Evolution and functions of long noncoding RNAs[J]. Cell, 2009, 136(4):629-641.
[37]  Struhl K. Transcriptional noise and the fidelity of initiation by RNA polymerase II[J]. Nat Struct Mol Biol, 2007, 14(2):103-105.
[38]  Zhang M, Zhao H, Xie S, et al. Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm[J]. Proc Natl Acad Sci USA, 2011, 108(50):20042-20047.
[39]  Lindberg D, de la Fuente Revenga M, Widersten M. Temperature and pH dependence of enzyme-catalyzed hydrolysis of trans-methylstyrene oxide. A unifying kinetic model for observed hysteresis, cooperativity, and regioselectivity[J]. Biochemistry, 2010, 49(10):2297-2304.
[40]  Ding J, Lu Q, Ouyang Y, et al. A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice[J]. Proc Natl Acad Sci USA, 2012, 109(7):2654-2659.
[41]  Ma J, Yan B, Qu Y, et al. Zm401, a short‐open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize[J]. Journal of Cellular Biochemistry, 2008, 105(1):136-146.
[42]  Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs:insights into functions[J]. Nat Rev Genet, 2009, 10:155-159.
[43]  Wierzbicki AT, Haag JR, Pikaard CS. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes[J]. Cell, 2008, 135(4):635-648.
[44]  Gómez G, Pallás V. Viroids:a light in the darkness of the lncRNA-directed regulatory networks in plants[J]. New Phytologist, 2013, 198(1):10-15.
[45]  祁云霞, 刘永斌, 荣威恒. 转录组研究新技术:RNA-Seq 及其应用[J]. 遗传, 2011, 33(11):1191-1202.
[46]  Kim ED, Sung S. Long noncoding RNA:unveiling hidden layer of gene regulatory networks[J]. Trends in Plant Science, 2012, 17(1):16-21.
[47]  ?rom UA, Derrien T, Beringer M, et al. Long noncoding RNAs with enhancer-like function in human cells[J]. Cell, 2010, 143(1):46-58.
[48]  白晶, 李力恒, 孙尧, 等. 传统中草药高通量测序技术 RNA-seq 及 lncRNA 挖掘的应用策略[J]. 中医药信息, 2014(2):20-23.
[49]  Deepak S, Shailasree S, Kini RK, et al. Role of hydroxyproline-rich glycoproteins in resistance of pearl millet against downy mildew pathogen Sclerospora graminicola[J]. Planta, 2007, 226(2):323, 333.

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133