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竹类植物与水稻等其它禾本科作物的系统进化关系及基因序列组成的比较

, PP. 165-169

Keywords: 竹类植物,水稻,系统进化,GC含量,密码子使用频率

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Abstract:

利用8个全长mRNA基因序列比较了竹类植物和水稻等禾本科作物的系统进化和序列组成等。结果表明,在与水稻、玉米和麦类作物的比较中,竹类植物与水稻有着最近的亲缘关系和更相似的基因序列特征(GC含量分布和密码子使用频率),它们甚至比水稻与玉米或水稻与麦类之间的亲缘关系更近。这一结果提示,水稻作为禾本科植物的模式物种,应与竹类植物存在良好的基因组共线性关系,水稻基因组序列信息对竹类植物基因组研究与分析具有重要参考价值。

References

[1]  马乃训.中国竹类植物生物多样性及其开发利用[A],见:竺肇华.中国热带地区竹藤发展[M].北京:中国林业出版社,2001:36~46
[2]  Benson D A,Karsch-Mizrachi I,Lipman D J,et al.GenBank:update.Nucleic Acids.Res.2004,32(Database issue):D23-6.www[J/OL].ncbi.nlm.nih.org
[3]  Guo Z H,Chen Y Y,Li D Z,et al.Genetic Variation and Evolution of the Alpine Bamboos(Poaceae:Bambusoideae)using DNA Sequence Data[J].Plant Res,2001,114:315~322
[4]  Guo Z H,Chen Y Y,Li D Z.Phylogenetic Studies on the Thamnocalamus Group and lts Allies(Gramineae:Bambusoideae)Based on ITS Sequence Data[J].Mol Phylogenet Evol,2002,22(l):20~30
[5]  Guo Z H,Li D Z.Phylogenetics of the Thamnocalamus group and its allies (Gramineae:Bambusoideae):inference from the seqdences of GBSSI gene and ITS spacer[J].Mol Phylogenet Evol,2004,30:1~12
[6]  Mason-Gamer R J,Weil C F,Kellogg E A.Granule-bound starch Synthase:Structure,function,and phylogenetid utility[J].Mol Biol Evol,1998,15(12):1658~1673
[7]  Nadot S,Bittar G,Carter L,et al.A phylogenetic analysis of monocotyledons based on the chloroplast gene rps4,using parsimony and a new numerical phenetics method[J].Mol Phylogenet Evol,1995,4(3):257~282
[8]  Zhang W.Phylogeny of the grass family(Poaceae)from rp116 intron Sequence data[J].Mol Phylogenet Evol,2000,15(1):135~146
[9]  Clark L G,Zhang W,Wendel J F.A Phylogeny of the Grass Family (Poaceae)Based on ndhF Sequence Data[J].Syst Bot,1995,20(4):436~460
[10]  Mathews S,Tsai R C,Kellogg E A.Phylogenetic Structure in the grass family(Poaceae):evidene from the nuclear gene phytochrome B[J].Am J Bot,2000,87(1):96~107
[11]  Hilu K W,Alice L A,Liang H.Phylogeny of Poaceae inferred from matK Sequences[J].Ann Mo Bot Gard,1999,86(4):835~851
[12]  Gaut B S,Morton B R,Mccaig B M,et al.Substitution rate comparisons between grasses and palms:synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbeL[J].Proc Natl Acad Sci USA,l996,93:10274~10279
[13]  Wong G K,Wang J,Tao L,et al.Compositional gradents in Gramineae genes[J].Genome Res,2002,12:851~856
[14]  Tian Y,Fan L,Thurau T,et al.The absene of TIR-type resistance gene analogues in sugar beet(Beta vulgaris L.)genome[J].J Mol Evol,2004,58(1):40~53
[15]  GPWG(Grass Phylogeny Working Group).Phylogeny and subfamilial classification of the grasses(Poaceae)[J].Annals of Missouri Botanical Garden,2001,88:373~457
[16]  查普曼G P,皮特 W E.禾本科植物导论(包括竹子及禾谷类作物)[M].王彦荣译.北京:科学出版社,1996:30~49
[17]  Gielis J.Upstream Fundamental Research in Bamboo:Possibilities and Directions[A].In:Proceedings of Vth International Bamboo Congres,Costa Rica,1999
[18]  Gale M P,Devos K M.Comparative genetics in the grasses[J].Proc Natl Acad Sci USA,1998,95:1971~1974
[19]  The rice chromosome 10 sequencing consortium.In-depth view of structur,activity,and evolution of rice chromosome 10[J].Science,2003,300:1566~1569
[20]  Paterson A H,Bowers J E,Chapman B A.Ancient polyploidization predating divergence of the cereals and its consequences for comparative genomics[J].Proc Natl Acad Sci USA,2004,101:9903~9908
[21]  Zhang Y,Xu G,Guo X,et al.Two ancient rounds of polyploidy in rice genome[J].J Zhejiang Univ(SCIENCE),2005,6B:87~90
[22]  傅懋毅,杨校生.我国竹类研究展望与竹林生境利用[J].竹类研究汇刊,2003,22(2):1~8
[23]  Gaut B S,Peek A S,Morton B R,et al.Patterns of genetic diversiffication within the Adh gene family in the grasses (Poaceae)[J].Mol Biol Evol,1999,16(8):1086~1097
[24]  Kaplinsky N J,Braun D M,Penterman J,et al.Utility and distribution of conserved noncoding sequences in the grasses[J].Proc Natl Acad Sci USA,2002,99:617~651
[25]  Baner P,Lubkowitz M,Tyers R,et al.Regulation and a conserved intron sequence of liguleless3/4knox class-I homeobox genes in grasses[J].Planta,2004,219:359~368
[26]  Matsui T,Hatase Y,Ohobayashi K.A wound-induced ACC oxidase gene of Moso Bamboo Shoot[J].Pak J Biol Sci,2001,4:228~232
[27]  Matsui T,Yokozeki Y,Inoue H.A wound-induced ACC Synthase Gene of Moso Bamboo Shoot[J].Asian J Plant Sci,2003,2:205~211
[28]  [lRice P,Longden I,Bleasby A.EMBOSS.The European Molecular Biology Open Softwar Suite[J/OL].Trends in Genetics,2000,16(6):276~277.http://www.uk.embnet.org/Software EMBOSS/
[29]  Yany Z.Phylogenetic Analysis by Maximum Likelihood(PAML)Version 2[M].London:University College,1999
[30]  Goldman N,Yang Z.A codon-based model of nucleotide substitution for protein-coding DNA sequences[J].Mol Biol Evol,1994,11:725~736
[31]  Nakamura Y,Gojobori T,Ikemura T.Codon usage tabulated from the international DNA sequence databases:status for the year 2000.Nucl.Acids Res.[J/OL],2000,28:292.http://www.kazusa.or.jp codon

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