Segel D J, Bachmann A, Hofrichter J, Hodgson K O, Doniach S, Kiefhaber T. J. Mol. Bio., 1999, 288: 489-499
[2]
Arai S, Hirai M. Biophysical J., 1999, 76: 2192-2197
[3]
Pfuhl M, Driscoll P C. Philos. Trans. Roy. Soc. London Ser. A, 2000, 358: 513-545
[4]
Wutrich K. New York: Wiley, 1995.
[5]
Mantsch H H, Chapman D. Infrared Spectroscopy of Biomolecules. New York: Wiley-Liss, 1996
[6]
Larsen O F A, Bodis P, Buma W J, Hannam J S, Leigh D A, Woutersen S. P. Natl. Acad. Sci. USA, 2005, 102: 13378- 13382
[7]
Wang J, Chen J, Hochstrasser R. J. Phys. Chem. B, 2006, 110: 7545-7555
[8]
Venkatramani R, Mukamel S. J. Chem. Phys., 2002, 117: 11089-11101
[9]
Asplund M C, Zanni M T, Hochstrasser R M. P. Natl. Acad. Sci. USA, 2000, 97: 8219-8224
[10]
Kim Y S, Hochstrasser R M. P. Natl. Acad. Sci. USA, 2005, 102: 11185-11190
[11]
Shakhnovich E I. Curr. Opin. Struc. Biol., 1997, 7: 29-40
[12]
Karplus M, McCammon J A. Nature Structural Biology, 2002, 9: 646-652
[13]
McCammon J, Harvey S. Dynamics of Proteins and Nucleic Acids. Cambridge: Cambridge University Press, 1987
[14]
Daura X, Gademann K, Schafer H, Jaun B, Seebach D, van Gunsteren W F. J. Am. Chem. Soc., 2001, 123: 2393-2404
[15]
Wolynes P G, Onuchic J N, Thirumalai D. Science, 1995, 267: 1619-1620
[16]
Gnanakaran S, Nymeyer H, Portman J, Sanbonmatsu K Y, Garcia A E. Curr. Opin. Struc. Biol., 2003, 13: 168-174
[17]
Mukamel S, Abramavicius D. Chem. Rev., 2004, 104: 2073-2098
[18]
Mukamel S. Principles of Nonlinear Optical Spectroscopy. New York: Oxford University Press, 1995
[19]
Zhuang W, Abramavicius D, Hayashi T, Mukamel S. J. Phys. Chem. B, 2004, 108: 18034-18045
[20]
Krimm S, Bandekar J. Adv. Protein Chem., 1986, 38: 181-364
[21]
Torii H, Tasumi M. J. Chem. Phys., 1992, 96: 3379-3387
[22]
Kwac K, Cho M H. J. Chem. Phys., 2003, 119: 2256-2263
[23]
Zanni M T, Asplund M C, Hochstrasser R M. J. Chem. Phys., 2001, 114: 4579-4590
[24]
Hayashi T, Jansen T L, Zhuang W, Mukamel S. J. Phys. Chem. A, 2005, 109: 64-82
[25]
Kubo R. J. Math. Phys., 1963, 4: 174-183
[26]
Freed J H, Bruno G V, Polnaszek C F. J. Phys. Chem., 1971, 75: 3385-3399
[27]
Schneider D J, Freed J H. Lasers, Molecules, and Methods (Eds. Hirschfelder J O, Wyatt R E, Coalson R D). New York: John Wiley & Sons, 1989, vol. LXXIII of Advances in Chemical Physics, 387
[28]
Sanda F, Mukamel S. J. Chem. Phys., 2006, 125: art. no. 014507
[29]
Woutersen S, Hamm P. J. Chem. Phys., 2001, 114: 2727-2737
[30]
Hamm P, Lim M H, Hochstrasser R M. J. Phys. Chem. B, 1998, 102: 6123-6138
[31]
Jansen T L, Zhuang W, Mukamel S. Journal of Chemical Physics, 2004, 121: 10577-10598
[32]
No镕, Fischer S. Curr. Opin. Struct. Biol., 2008, 18: 154-162
[33]
Chodera J D, Singhal N, Pande V S, Dill K A, Swope W C. J. Chem. Phys., 2007, 126: art. no. 155101
[34]
Sriraman S, Kevrekidis I G, Hummer G. J. Phys. Chem. B, 2005, 109: 6479-6484
[35]
Bowman G R, Huang X, . Pande V S. Cell Research, 2010, 20: 622-630
[36]
Smith A W, Lessing J, Ganim Z, Peng C S, Tokmakoff A, Roy S, Jansen T L C, Knoester J. J. Phys. Chem. B, 2010, 114: 10913-10924
[37]
Stryer L. Biochemistry, 2nd ed, New York: W. H. Freeman Company, 1995
[38]
Balbach J. J. Am. Chem. Soc., 2000, 122: 5887-5888
[39]
Torii H, Tasumi M. J. Raman Spec., 1998, 29: 81-86
[40]
Demirdoven N, Cheatum C M, Chung H S, Khalil M, Knoester J, Tokmakoff A. J. Am. Chem. Soc., 2004, 126: 7981-7990
[41]
Wang T, Zhu Y J, Getahun Z, Du D G, Huang C Y, DeGrado W F, Gai F. J. Phys. Chem. B, 2004, 108: 15301-15310
[42]
Zheng J R, Kwak K, Asbury J, Chen X, Piletic I R, Fayer M D. Science, 2005, 309: 1338-1343
[43]
Kolano C, Helbing J, Kozinski M, Sander W, Hamm P. Nature, 2006, 444: 469-472
[44]
Zanni M T, Ge N H, Kim Y S, Hochstrasser R M. P. Natl. Acad. Sci. USA, 2001, 98: 11265-11270
[45]
Onuchic J N, LutheySchulten Z, Wolynes P G. Annu. Rev. Phys. Chem., 1997, 48: 545-600
[46]
Bryngelson J D, Onuchic J N, Socci N D, Wolynes P G. Proteins-Structure Function and Genetics, 1995, 21: 167-195
[47]
Kubo R. Stochastic Processes in Chemical Physics(Ed. Shuler K E). New York: John Wiley and Sons, 1969, vol. XV of Advances in Chemical Physics, 101
[48]
Gamliel D, Levanon H. Stochastic Processes in Magnetic Resonance. River Edge, NJ: World Scientific, 1995
[49]
MacPhail R A, Snyder R G, Strauss H L. J. Chem. Phys., 1982, 77: 1118-1137
[50]
Turner J J, Gordon C M, Howdle S M. J. Phys. Chem., 1995, 99: 17532-17538
[51]
Kwac K, Cho M H. J. Chem. Phys., 2003, 119: 2247-2255
[52]
Schweitzer-Stenner R. Biophys. J., 2002, 83: 523-532
[53]
Buchete N V, Hummer G. J. Phys. Chem. B, 2008, 112: 6057-6069
[54]
Swope W C, Pitera J W, Suits F. J. Phys. Chem. B, 2004, 108: 6571-6581
