［1］Torsvik V, Goksoyr J, Daae F L. High diversity in DNA of soil bacteria[J]. Appl Environ Microbiol, 1990,56: 782-787.
[2]
［2］Amann R I, Ludqig W, Schleifer H H. Phylogenetic identification and in-situ detection of individual microbial cells without cultivation[J]. Microbial Rev, 1995, 59: 143-169.
［5］Horz H, Yimga M T, Liesack W. Detection of methan-otroph diversity on roots of submerged rice plants by molecular retrieval of pmoA,mmoX,mxaF, and 16SrRNA and Ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling[J]. Applied and Environmental Microbiology, 2001,67 (9):4 177-4 185.
[6]
［6］Marsh T L, Liu W T, Forney L J, et al. Beginning a molecular analysis of the eukaryal community in activated sludge[J]. Wat Sci Tech,1998,37(4-5):455-460.
[7]
［7］Liu W T, Marsh T L, Cheng H, et al. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16SrRNA[J]. Appl Environ Microbiol, 1997,63(11) : 4 516-4 522.
[8]
［8］Moeseneder M M, Arrieta J M, Muyzer G, et al. Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterio-plankton communities and comparison with denaturing gradient gel electrophoresis[J]. Appl Environ Micro-biol, 1999, 65(8):3 518-3 525.
[9]
［9］Hiraishi A, Iwasaki M, Shinjo H. Terminal restricton pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge[J]. Journal of Bioscience and Bioengineering, 2000,90(2):148-156.
[10]
［10］Bernhard A E , Field K G. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes[J]. Appl Environ Microbiol, 2000, 66 (4): 1 587-1 594.
[11]
［11］Scala D J, Kerkhof L J. Horizontal heterogeneity of deni-trifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism ana-lysis[J]. Appl Environ Microbiol, 2000, 66(5): 1 980-1 986.
[12]
［12］Gonzá lez J M, Simó R, Massana R, et al. Bacterial community structure associated with a dimethylsulfonio-propionate-producing north atlantic algal bloom[J]. Appl Environ Microbiol, 2000,66(10):4 237-4 246.
[13]
［13］Derakshani M, Lukow T, Liesack W. Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms[J]. Appl Environ Microbiol, 2001, 67(2): 623-631.
[14]
［14］Horz H P, Rotthauwe J H, Lukow T, et al. Identification of major subgroups of ammonia-oxidizing bacteria in en-vironmental samples by T-RFLP analysis of amoA PCR products, 2000, 39:197-204.
[15]
［15］Bruce K. D. Analysis of mer gene subclasses within bacterial communities in soils and sediments resolved by fluorescent-PCR-restriction fragment length poly-morphism profiling[J]. Appl Environ Microbiol,1997, 63:4 914-4 919.
[16]
［16］Clement B G, Kehl L E, DeBord K L, et al. Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities[J]. J Microbiol Methods, 1998,31:135-142.
[17]
［17］Dunbar J, Ticknor L O, Kuske C R. Assessment of microbial diversity in four southwestern U.S. soils by 16S rRNA gene terminal restriction fragment analysis[J]. Appl Environ Microbiol, 2000, 66(7):2 943-2 950.
[18]
［18］Osborn A M, Moore E R B, Timmis K N. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics[J]. Environ Microbiol, 2000,2: 39-50.
[19]
［19］Sessitsch A, Weilharter A, Gerzabek M. H, et al. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment[J]. Appl Environ Microbiol, 2001,67(9): 4 215-4 224.
[20]
［20］Leser T D, Lindecrona R H, Jensen T, et al. Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae[J]. Appl Environ Microbiol, 2000, 66(8): 3 290-3 296.
[21]
［21］Lü demann H, Arth I, Liesack W. 2000. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores[J]. Appl Environ Microbiol, 66(2):754-762.
[22]
［22］Gong J, Forster R J, Yu H, et al. Diversity and phylogenetic analysis of bacteria in the mucosa of chicken ceca and comparison with bacteria in the cecal lumen[J]. Microbiology Letters, 2002,208: 1-7.
[23]
［23］van der Maarel M J, Artz R. R, Haanstra R, et al. Association of marine Archaea with the digestive tracts of two marine fish species[J]. Appl Environ Microbiol, 1998,64:2 894-2 898.
[24]
［24］Marsh T L, Saxman P, Cole J, et al. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis[J]. Appl Environ Microbiol, 2000, 66(8):3 616-3 620.
[25]
［25］Hiorns W D, Hastings R C, Head I M, et al. Am-plification of 16S ribosomal RNA genes of autotrophic ammonia-oxidizing bacteria demonstrates the ubiquity of nitrosospiras in the environment[J]. Microbiology, 1995, 141:2 793-2 800.
[26]
［26］Marsh T L. Terminal restriction fragment length poly-morphism(T-RFLP):an emerging method for charac-terizing diversity among homologous populations of ampli-fication products[J]. Current Opinion in Microbiology, 1999, 2:323-327.
[27]
［27］Franklin R B, Garland J L, Bolster C H, et al. Impact of dilution on microbial community structure and func-tional potential: comparison of numerical simulations and batch culture experiments[J]. Appl Environ Microbiol, 2001,67(2):702-712.
[28]
［28］Lukow T, Dunfield P F, Liesack W. Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants [J].Microbiology Ecology,2000,32:241-247.
[29]
［29］Fiksdal L, Make J S, LaCroix S J, et al. Survival and detection of Bacteroides spp, prospective indicator bac-teria[J]. Appl Environ Microbiol,1985,49:148-150.
[30]
［30］Resnick I G, Levin M A. Assessment of bifidobacteria as indicators of human fecal pollution[J]. Appl Environ Microbiol, 1981, 42:433-438.
[31]
［31］Dunbar J, Ticknor L O, Kuske C R. 2001.Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities[J]. Appl Environ Microbiol, 67(1),190-197.
[32]
［32］Ranjard L, Poly F, Nazaret S. Monitoring complex bacterial communities using culture-independent mole-cular techniques:application to soil enviroment[J]. Res Microbiol,2000,151:167-177.
