Zhang D, Wang Y. Beta-amylase in developing apple fruits: Activities, amounts and subcellular localization[J]. Science in China Series C: Life Sciences, 2002, 45(4): 429-440.
[2]
Rejzek M, Stevenson C E, Southard A M, et al. Chemical genetics and cereal starch metabolism: Structural basis of the non- covalent and covalent inhibition of barley beta- amylase[J]. Molecular BioSystems, 2011, 7(3): 718-730.
[3]
Vinje M A, Willis D K, Duke S H, et al. Differential expression of two beta-amylase genes (Bmy1 and Bmy2) in developing and mature barley grain[J]. Planta, 2011, 233(5): 1001-1010.
[4]
Totsuka A, Nong V H, Kadokawa H, et al. Residues essential for catalytic activity of soybean beta-amylase[J]. European Journal of Biochemistry, 1994, 221(2): 649-654.
[5]
Valerio C, Costa A, Marri L, et al. Thioredoxin-regulated beta-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress[J]. Journal of Experimental Botany, 2011, 62(2): 545-555.
[6]
Reinhold H, Soyk S, Simkova K, et al. Beta-amylase-like proteins function as transcription factors in Arabidopsis, controlling shoot growth and development[J]. Plant Cell, 2011, 23(4): 1391-1403.
[7]
Mason-Gamer R J. The β-amylase genes of grasses and a phylogenetic analysis of the Triticeae (Poaceae)[J]. Ameican Jounal of Botany, 2005, 92(6): 1045-1058.
[8]
Goodstein D M, Shu S, Howson R, et al. Phytozome: Acomparative platform for green plant genomics[J]. Nucleic Acids Research, 2012, 40:D1178- D1186.
[9]
Robert D, Finn, John Tate, Jaina Mistry, et al. The Pfam protein families database[J]. Nucleic Acids Research, 2008, 36(1): D281-D288.
[10]
Larkin M A, Blackshields G, Brown N P, et al. Clustal W and Clustal X version 2.0[J]. Bioinformatics, 2007, 23(21): 2947-2948.
[11]
Tamura K, Peterson D, Peterson N, et al. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods[J]. Molecular Biology and Evolution, 2011, 28(10): 2731-2739.
[12]
Guindon S, Delsuc F, Dufayard JF, et al.Estimating maximum likelihood phylogenies with PhyML[J]. Methods in Molecular Biology, 2009, 537 (1): 113-137.
[13]
Yang Z. PAML 4: Phylogenetic analysis by maximum likelihood[J]. Molecular Biology and Evolution, 2007, 24(8): 1586-1591.
[14]
Gu X, Velden K V. DIVERGE: Phylogeny-based analysis for functionalstructural divergence of a protein family[J]. Bioinformatics, 2002, 18(3): 500-501.
[15]
Suyama M, Torrents D, Bork P. PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments[J]. Nucleic Acids Research, 2006, 34: W609-W612.
[16]
Yang Z, Bielawski J P. Statistical methods for detecting molecular adaptation[J]. Trends in Ecology & Evolution, 2000, 15(12): 496-503.
[17]
Tusher V G, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response[J]. Proceedings of the National Academy of Sciences, 2001, 98(9): 5116-5121.
[18]
Yang Z, Wang Y, Xu S, et al. Molecular evolution and functional divergence of soluble starch synthase genes in cassava (manihot esculenta crantz)[J]. Evolutionary Bioinformatics Online, 2013, 9: 239- 249.
[19]
Gu X. Functional divergence in protein (family) sequence evolution[J]. Genetica, 2003, 118(2/3): 133-141.
[20]
Liu Q, Wang H, Zhang Z, et al. Divergence in function and expression of the NOD26- like intrinsic proteins in plants[J]. BMC Genomics, 2009, 10: 313.
[21]
Suárez-Castillo E C, García-Arrarás J E. Molecular evolution of the ependymin protein family: A necessary update[J]. BMC Evolutionary Biology, 2007, 7: 23.
[22]
Yang Z, Nielsen R, Goldman N, et al. Codon-substitution models for heterogeneous selection pressure at amino acid sites[J]. Genetics, 2000, 155(1): 431-449.
[23]
Yang Z, Wong W, Nielsen R. Bayes empirical bayes inference of amino acid sites under positive selection[J]. Molecular Biology and Evolution, 2005, 22(4): 1107-1118.
[24]
Singh A, Pandey A, Baranwal V, et al. Comprehensive expression analysis of rice phospholipase D gene family during abiotic stresses and development[J]. Plant Signal & Behavior, 2012, 7(7): 847-855.
[25]
Vinje M A, Willis D K, Duke SH, et al. Differential expression of two β -amylase genes (Bmy1 and Bmy2) in developing and mature barley grain[J]. Planta, 2011, 233(5): 1001-1010.
[26]
Song R, Llaca V, Linton E, et al. Sequence, regulation, and evolution of the maize 22- kD alpha zein gene family[J]. Genome Research, 2001, 11(11): 1817-1825.
[27]
Lynch M, O'Hely M, Walsh B, et al. The probability of preservation of a newly arisen gene duplicate[J]. Genetics, 2001, 159(4): 1789-1804.
