Lin H,Moghe G,Ouyang S,et al.Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana[J].BMC Evolutionary Biology,2010,10:41
[2]
Amiri H,Davids W,Andersson S G E.Birth and death of orphan genes in Rickettsia[J].Molecular Biology and Evolution,2003,20(10):1575-1587
[3]
Domazet-Loso T,Tautz D.An evolutionary analysis of orphan genes in Drosophila[J].Genome Research,2003,13(10):2213-2219
[4]
Siew N,Fischer D.Analysis of singleton ORFans in fully sequenced microbial genomes[J].Proteins:Structure,Function,and Bioinformatics,2003,53(2):241-251
[5]
Conte M,Gaillard S,Droc G,et al.Phylogenomics of plant genomes:a methodology for genoe-wide search es for orthologs in plants[J].BMC Genomics,2008,9:183
[6]
Goff S A,Ricke D,Lan T H,et al.A draft sequence of the rice genome(Oryza sativa L.ssp.japonica)[J].Science,2002,296:92-100
[7]
Schmutz J,Cannon S B,Schlueter J,et al.Genome sequence of the palaeopolyploid soybean[J].Nature,2010,463:178-183
[8]
Campbell M A,Zhu W,Jiang N,et al.Identification and characterization of lineage-specific genes within the Poaceae[J].Plant Physiology,2007,145(4):1311-1322
[9]
Xu Q,Chen L L,Ruan X,et al.The draft genome of sweet orange(Citrus sinensis)[J].Nature Genetics,2012,45(1):59-68
[10]
Velasco R,Zharkikh A,Affourtit J,et al.The genome of the domesticated apple(Malus domestica Borkh.)[J].Nature Genetics,2010,42(10):833-839
[11]
Yang X,Jawdy S,Tschaplinski T J,et al.Genome-wide identification of lineage-specific genes in Arabidopsis,Oryza and Populus[J].Genomics,2009,93(5):473-480
[12]
Jaillon O,Aury J M,Noel B,et al.The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla[J].Nature,2007,449(7161):463-467
[13]
Striepen B,Pruijssers A J P,Huang J,et al.Gene transfer in the evolution of parasite nucleotide biosynthesis[J].Proc Natl Acad Sci USA,2004,101(9):3154-3159
[14]
Stechmann A,Cavalier-Smith T.Rooting the eukaryote tree by using a derived gene fusion[J].Science,2002,297(5578):89-91
[15]
Cai J J,Woo P C Y,Lau S K P,et al.Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota[J].Journal of Molecular Evolution,2006,63(1):1-11
[16]
Schmid K J,Aquadro C F.The evolutionary analysis of"orphans"from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes[J].Genetics,2001,159(2):589-598
[17]
Levine M T,Jones C D,Kern A D,et al.Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression[J].Proc Natl Acad Sci USA,2006,103(26):9935-9939