| [1] | Nei M，Kumar S.Molecular evolution and phylogenetics[M].NewYork：Oxford University Press Inc，2000.
|
| [2] | Wang J，Yan B，Chen G，et al.Adaptive evolution in the GAF domain of phytochromes in gymnosperms[J].Biochemical Genetics，2010，48(3):236-247.
|
| [3] | Yang Z，Nielsen R.Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages[J].Molecular Biology and Evolution，2002，19：908-917.
|
| [4] | Mathews S，Burleigh J G，Donoghue M J.Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms[J].Molecular Biology and Evolution，2003，20：1087-1097.
|
| [5] | 苏应娟，王艇，杨维东，等.罗汉松属植物DNA的提取和RAPD分析[J].中山大学学报(自然科学版)，1998，37(71)：13-18.
|
| [6] | Schmidt M，Schneider-Poetsch HAW.The evolution of gymnosperms redrawn by phytochrome genes：The Gnetatae appear at the base of the gymnosperms[J].Journal of molecular evolution，2002，54：715-724.
|
| [7] | Thompson J D，Gibson T J，Plewniak F，et al.The CLUSTAL X windows interface：flexible strategies for multiple sequence alignment aided by quality analysis tools[J].Nucleic Acids Research, 1997，25：4876-4882.
|
| [8] | Swofford，Paup D L.Phylogenetic analysis using parsimony (and other methods)[M].Sinauer Associates：Sunderland MA,2002.
|
| [9] | Yang Z.PAML 4：a program package for phylogenetic analysis by maximum likelihood[J].Molecular Biology and Evolution，2007，24 (8)：1586-1591.
|
| [10] | Yang Z.Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution[J]. Molecular Biology and Evolution，1998，15：568-573.
|
| [11] | Nielsen R，Yang Z.Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene[J].Genetics，1998，148：929-936.
|
| [12] | Yang Z.Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A[J].Journal of Molecular Evolution，2000，51(5)：423-432.
|
| [13] | Schneider-Poetsch H，Kolukisaoglu ？，Clapham D H，et al.Non-angiosperm phytochromes and the evolution of vascular plants[J].Plant Physiology，1998，102：612-622.
|
| [14] | 王静，王艇，苏应娟，等.裸子植物中光敏色素PHY-PAS1结构域的适应性进化[J].植物学报，2009,44(5)：608-618.
|
| [15] | 徐平珍，刘涛，杨莹，等.脱落酸在植物花发育过程中的作用[J].云南植物研究，2007，29(2)：215-222. [3]徐燕，薛立，屈明.植物抗寒性的生理生态学机制研究进展[J].林业科学，2007，43（4)：88-93.
|
| [16] | 王静，王艇.高等植物光敏色素的分子结构、生理功能和进化特征[J].植物学通报，2007，24(5)：649-658.
|
| [17] | Rockwell N C，Lagarias J C.The structure of phytochrome.A picture is worth a thousand spectra[J].Plant Cell，2006a，18：4-14.
|
| [18] | Rockwell N C，Su Y S，Lagarias J C.Phytochrome structure and signaling mechanisms[J].Annual Review of Plant Biology，2006b，57：837-858.
|
| [19] | Schneider-Poetsch H，Braun B，Marx S，et al.Phytochromes and bacterial sensor proteins are related by structural and functional homologies[J].FEBS LETTERS,1991，281：245-249.
|
| [20] | Yang Z，Wong W S W，Nielsen R.Bayes empirical Bayes inference of amino acid sites under positive selection[J].Molecular Biology and Evolution，2005，22：1107-1118.
|
| [21] | Zhang J，Nielsen R，Yang Z.Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level[J].Molecular Biology and Evolution，2005，22：2472-2479.
|
