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Populationgeneticstudiesinthegenomicsequencingera

DOI: 10.13918/j.issn.2095-8137.2015.4.223, PP. 223-232

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[1]  10 Chen H, Slatkin M. 2013. Inferring selection intensity and allele age from multi-locus haplotype structure. Genes, Genomes, Genetics, 3(8): 1429-1442.
[2]  11 Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. 2005. Ascertainment bias in studies of human genome-wide polymorphism. Genome Research, 15(11): 1496-1502.
[3]  12 Coventry A, Bull-Otterson LM, Liu XM, Clark AG, Maxwell TJ, Crosby J, Hixson JE, Rea TJ, Muzny DM, Lewis LR, Wheeler DA, Sabo A, Lusk C, Weiss KG, Akbar H, Cree A, Hawes AC, Newsham I, Varghese RT, Villasana D, Gross S, Joshi V, Santibanez J, Morgan M, Chang K, Hale Iv W, Templeton AR, Boerwinkle E, Gibbs R, Sing CF. 2010. Deep resequencing reveals excess rare recent variants consistent with explosive population growth. Nature Communications, 1(8): 131.
[4]  13 Doebley JF, Gaut BS, Smith BD. 2006. The molecular genetics of crop domestication. Cell, 127(7): 1309-1321.
[5]  14 Durrett R, Schweinsberg J. 2004. Approximating Selective Sweeps. Theoretical Population Biology, 66(2): 129-138.
[6]  15 Enard W, Przeworski M, Fisher SE, Lai CSL, Wiebe V, Kitano T, Monaco AP, Pääbo S. 2002. Molecular evolution of FOXP2 , a gene involved in speech and language. Nature, 418(6900): 869-872.
[7]  16 Etheridge A, Pfaffelhuber P, Wakolbinger A. 2006. An approximate sampling formula under genetic hitchhiking. The Annals of Applied Probability, 16(2): 685-729.
[8]  17 Evans SN, Shvets Y, Slatkin M. 2007. Non-equilibrium theory of the allele frequency spectrum. Theoretical Population Biology, 71(1): 109-119.
[9]  18 Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M. 2013. Robust demographic inference from genomic and SNP data. PLoS Genetics, 9(10): e1003905.
[10]  19 Fang MY, Larson G, Ribeiro HS, Li N, Andersson L. 2009. Contrasting mode of evolution at a coat color locus in wild and domestic pigs. PLoS Genetics, 5(1): e1000341.
[11]  20 Fay JC, Wu CI. 2000. Hitchhiking Under Positive Darwinian Selection. Genetics, 155(3): 1405-1413.
[12]  21 Fu W, O'connor TD, Jun G, Kang HM, Abecasis G, Leal SM, Gabriel SA, David, Shendure J, Nickerson DA, Others. 2013. Analysis of 6, 515 exomes reveals the recent origin of most human protein-coding variants. Nature, 493(7431): 216-220.
[13]  22 Fu YX. 1995. Statistical properties of segregating sites. Theoretical Population Biology, 48(2): 172-197.
[14]  23 Fu YX, Li WH. 1993. Statistical tests of neutrality of mutations. Genetics, 133(3): 693-709.
[15]  24 Garud NR, Messer PW, Buzbas EO, Petrov DA. 2015. Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. PLoS Genetics, 11(2): e1005004.
[16]  25 Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD, Altshuler DL, Others. 2011. Demographic history and rare allele sharing among human populations. Proceedings of the National Academy of Sciences of the United States of America, 108(29): 11983-11988.
[17]  26 Griffiths RC, Tavaré S. 1998. The age of a mutation in a general coalescent tree. Communications in Statistics. Stochastic Models, 14(1-2): 273-295.
[18]  27 Griffiths RC. 1984. Asymptotic line-of-descent distributions. Journal of Mathematical Biology, 21(1): 67-75.
[19]  28 Griffiths RC, Tavare S. 1994. Simulating probability distributions in the coalescent. Theoretical Population Biology, 46(2): 131-159.
[20]  29 Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A. 2011. Bayesian inference of ancient human demography from individual genome sequences. Nature Genetics, 43(10): 1031-1034.
[21]  30 Grossman SR, Shylakhter I, Karlsson EK, Byrne EH, Morales S, Frieden G, Hostetter E, Angelino E, Garber M, Zuk O, Lander E S, Schaffner S F, Sabeti P C. 2010. A composite of multiple signals distinguishes causal variants in regions of positive selection. Science, 327(5967): 883-886.
[22]  31 Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. 2009. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genetics, 5(10): e1000695.
[23]  32 Han E, Sinsheimer JS, Novembre J. 2014. Characterizing bias in population genetic inferences from low-coverage sequencing data. Molecular Biology and Evolution, 31(3): 726-735.
[24]  33 Hancock AM, Witonsky DB, Ehler E, Alkorta-Aranburu G, Beall C, Gebremedhin A, Sukernik R, Utermann G, Pritchard J, Coop G, Di Rienzo A. 2010. Human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency. Proceedings of the National Academy of Sciences of the United States of America, 107(Supplement 2): 8924-8930.
[25]  34 Harris K, Nielsen R. 2013. Inferring demographic history from a spectrum of shared haplotype lengths. PLoS Genetics, 9(6): e1003521.
[26]  35 Hermisson J, Pennings PS. 2005. Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics, 169(4): 2335-2352.
[27]  36 Hobolth A, Christensen OF, Mailund T, Schierup MH. 2007. Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genetics, 3(2): e7.
[28]  37 Huang XH, Kurata N, Wei XH, Wang ZX, Wang AH, Zhao Q, Zhao Y, Liu KY, Lu HY, Li WJ, Guo YL, Lu YQ, Zhou CC, Fan DL, Weng QJ, Zhu CR, Huang T, Zhang L, Wang YC, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan XP, Xu Q, Dong GJ, Zhan QL, Li CY, Fujiyama A, Toyoda A, Lu TT, Feng Q, Qian Q, Li JY, Han B. 2012. A map of rice genome variation reveals the origin of cultivated rice. Nature, 490(7421): 497-501.
[29]  38 Hufford MB, Xu X, Van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai JS, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang GY, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J. 2012. Comparative population genomics of maize domestication and improvement. Nature Genetics, 44(7): 808-811.
[30]  39 Jiang R, Tavaré S, Marjoram P. 2009. Population genetic inference from resequencing data. Genetics, 181(1): 187-197.
[31]  40 Jin L, Su B. 2000. Natives or immigrants: modern human origin in East Asia. Nature Reviews Genetics, 1(2): 126-133.
[32]  41 Johnson PLF, Slatkin M. 2006. Inference of population genetic parameters in metagenomics: a clean look at messy data. Genome Research, 16(10): 1320-1327.
[33]  42 Kamberov YG, Wang SJ, Tan JZ, Gerbault P, Wark A, Tan LZ, Yang YJ, Li SL, Tang K, Chen H, Powell A, Itan Y, Fuller D, Lohmueller J, Mao JH, Schachar A, Paymer M, Hostetter E, Byrne E, Burnett M, Mcmahon AP, Thomas MG, Lieberman DE, Jin L, Tabin CJ, Morgansend BA, Sabeti PC. 2013. Modeling recent human evolution in mice by expression of a selected EDAR variant. Cell, 152(4): 691-702.
[34]  43 Ke YH, Su B, Song XF, Lu DR, Chen LF, Li HY, Qi CJ, Marzuki S, Deka R, Underhill P, Xiao CJ, Shriver M, Lell J, Wallace D, Wells RS, Seielstad M, Oefner P, Zhu DL, Jin JZ, Huang W, Chakraborty R, Chen Z, Jin L. 2001. African origin of modern humans in East Asia: a tale of 12, 000 Y chromosomes. Science, 292(5519): 1151-1153.
[35]  44 Keinan A, Mullikin JC, Patterson N, Reich D. 2007. Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nature Genetics, 39(10): 1251-1255.
[36]  45 Kim Y, Stephan W. 2002. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics, 160(2): 765-777.
[37]  46 Kimura M. 1955. Solution of a process of random genetic drift with a continuous model. Proceedings of the National Academy of Sciences of the United States of America, 41(3): 144-150.
[38]  66 Patterson N, Price AL, Reich D. 2006. Population structure and eigenanalysis. PLoS Genetics, 2(12): e190.
[39]  67 Peng Y, Shi H, Qi XB, Xiao CJ, Zhong H, Ma RLZ, Su B. 2010. The ADH1B Arg47His polymorphism in East Asian populations and expansion of rice domestication in history. BMC Evolutionary Biology, 10(1): 15.
[40]  68 Peng Y, Yang ZH, Zhang H, Cui CY, Qi XB, Luo XJ, Tao X, Wu TY, Ouzhuluobu, Basang, Ciwangsangbu, Danzengduojie, Chen H, Shi H, Su B. 2011. Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas. Molecular Biology and Evolution, 28(2): 1075-1081.
[41]  69 Pritchard JK, Di Rienzo A. 2010. Adaptation-not by sweeps alone. Nature Reviews Genetics, 11(10): 665-667.
[42]  70 Polanski A & Kimmel M. 2003. New explicit expressions for relative frequencies of single-nucleotide polymorphisms with application to statistical inference on population growth. Genetics , 165(1): 427-436.
[43]  71 Pritchard JK, Pickrell JK, Coop G. 2010. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Current Biology, 20(4): R208-R215.
[44]  72 Przeworski M. 2003. Estimating the time since the fixation of a beneficial allele. Genetics, 164(4): 1667-1676.
[45]  73 Przeworski M, Coop G, Wall JD. 2005. The signature of positive selection on standing genetic variation. Evolution, 59(11): 2312-2323.
[46]  74 Qi JJ, Liu X, Shen D, Miao H, Xie BY, Li XX, Zeng P, Wang SH, Shang Y, Gu XF, Du YC, Li Y, Lin T, Yuan JH, Yang XY, Chen JF, Chen HM, Xiong XY, Huang K, Fei ZJ, Mao LY, Tian L, Städler T, Renner SS, Kamoun S, Lucas WJ, Zhang ZH, Huang SW. 2013a. A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity. Nature Genetics, 45(12): 1510-1515.
[47]  75 Qi XB, Cui CY, Peng Y, Zhang XM, Yang ZH, Zhong H, Zhang H, Xiang K, Cao XY, Wang Y, Ouzhuluobu, Basang, Ciwangsangbu, Bianba, Gonggalanzi, Wu TY, Chen H, Shi H, Su B. 2013b. Genetic evidence of Paleolithic colonization and Neolithic expansion of modern humans on the Tibetan Plateau. Molecular Biology and Evolution, 30(8): 1761-1778.
[48]  76 Sabeti PC, Reich DE, Higgins JM, Levine HZP, Richter DJ, Schaffner SF, Gabriel SB, Platko JV, Patterson NJ, Mcdonald GJ, Ackerman HC, Campbell SJ, Altshuler D, Cooper R, Kwiatkowski D, Ward R, Lander ES. 2002. Detecting recent positive selection in the human genome from haplotype structure. Nature, 419(6909): 832-837.
[49]  77 Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, International HapMap Consortium. 2007. Genome-wide detection and characterization of positive selection in human populations. Nature, 449(7164): 913-918.
[50]  78 Schaffner SF, Foo C, Gabriel S, Reich D, Daly MJ, Altshuler D. 2005. Calibrating a Coalescent Simulation of Human Genome Sequence Variation. Genome Research, 15(11): 1576-1583.
[51]  79 Schiffels S, Durbin R. 2014. Inferring human population size and separation history from multiple genome sequences. Nature Genetics, 46(8): 919-925.
[52]  80 Sheehan S, Harris K, Song YS. 2013. Estimating variable effective population sizes from multiple genomes: A sequentially Markov conditional sampling distribution approach. Genetics, 194(3): 647-662.
[53]  81 Shi H, Su B. 2011. Molecular adaptation of modern human populations. International Journal of Evolutionary Biology, 2011: Article ID 484769.
[54]  82 Shi H, Tan SJ, Zhong H, Hu WW, Levine A, Xiao CJ, Peng Y, Qi XB, Shou WH, Ma RLZ, Li Y, Su B, Lu X. 2009. Winter temperature and UV are tightly linked to genetic changes in the p53 tumor suppressor pathway in Eastern Asia. The American Journal of Human Genetics, 84(4): 534-541.
[55]  83 Shriver MD, Kennedy GC, Parra EJ, Lawson HA, Sonpar V, Huang J, Akey JM, Jones KW. 2004. The genomic distribution of population substructure in four populations using 8, 525 autosomal SNPs. Human Genomics, 1(4): 274-286.
[56]  84 Simonson TS, Yang YZ, Huff CD, Yun HX, Qin G, Witherspoon DJ, Bai ZZ, Lorenzo FR, Xing JC, Jorde LB, Prchal JT, Ge RL. 2010. Genetic evidence for high-altitude adaptation in Tibet. Science, 329(5987): 72-75.
[57]  1 Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. 2002. Interrogating a High-density SNP map for Signatures of Natural Selection. Genome Research, 12(12): 1805-1814.
[58]  2 Beall CM, Cavalleri GL, Deng LB, Elston RC, Gao Y, Knight J, Li CH, Li JC, Liang Y, McCormack M, Montgomery HE, Pan H, Robbins PA, Shianna KV, Tam SC, Tsering N, Veeramah KR, Wang W, Wangdui P, Weale ME, Xu YM, Xu Z, Yang L, Zaman MJ, Zeng CQ, Zhang L, Zhang XL, Zhaxi P, Zheng YT. 2010. Natural selection on EPAS1 ( HIF2α ) associated with low hemoglobin concentration in Tibetan highlanders. Proceedings of the National Academy of Sciences of the United States of America, 107(25): 11459-11464.
[59]  3 Burgess R, Yang ZH. 2008. Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors. Molecular Biology and Evolution, 25(9): 1979-1994.
[60]  4 Cann RL, Stoneking M, Wilson AC. 1987. Mitochondrial DNA and human evolution. Nature, 325(6099): 31-36.
[61]  5 Cavalli-Sforza LL, Bodmer WF. 1971. The Genetics of Human Populations. San Francisco: Dover Publications.
[62]  6 Chen H. 2012. The joint allele frequency spectrum of multiple populations: A coalescent theory approach. Theoretical Population Biology, 81(2): 179-195.
[63]  7 Chen H, Chen K. 2013. Asymptotic distributions of coalescence times and ancestral lineage numbers for populations with temporally varying size. Genetics, 194(3): 721-736.
[64]  8 Chen H, Patterson N, Reich D. 2010. Population differentiation as a test for selective sweeps. Genome Research, 20(3): 393-402.
[65]  9 Chen H, Hey J, Slatkin M. 2015. A hidden Markov model for investigating recent positive selection through haplotype structure. Theoretical Population Biology, 99: 18-30.
[66]  47 Kong QP, Yao YG, Sun C, Bandelt HJ, Zhu CL, Zhang YP. 2003. Phylogeny of East Asian mitochondrial DNA lineages inferred from complete sequences. The American Journal of Human Genetics, 73(3): 671-676.
[67]  48 Lewontin RC, Krakauer J. 1973. Distribution of gene Frequency as a test of the Theory of the Selective Neutrality of Polymorphisms. Genetics, 74(1): 175-195.
[68]  49 Li HP, Stephan W. 2006. Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genetics, 2(10): e166.
[69]  50 Li H, Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature, 475(7357): 493-496.
[70]  51 Li H, Gu S, Cai XY, Speed WC, Pakstis AJ, Golub EI, Kidd JR, Kidd KK. 2008. Ethnic related selection for an ADH Class I variant within East Asia. PLoS One, 3(4): e1881.
[71]  52 Li J, Zhang YP. 2009. Advances in research of the origin and domestication of domestic animals. Biodiversity Science, 17(4): 319-329. (in Chinese)
[72]  53 Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE. 2009. On the origin and spread of an adaptive allele in deer mice. Science, 325(5944): 1095-1098.
[73]  54 Liu XM, Fu YX, Maxwell TJ, Boerwinkle E. 2010. Estimating population genetic parameters and comparing model goodness-of-fit using DNA sequences with error. Genome Research, 20(1): 101-109.
[74]  55 Lohse K, Harrison RJ, Barton NH. 2011. A general method for calculating likelihoods under the coalescent process. Genetics, 189(3): 977-987.
[75]  56 Lukić S, Hey J. 2012. Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion. Genetics, 192(2): 619-639.
[76]  57 Lukić S, Hey J, Chen K. 2011. Non-equilibrium allele frequency spectra via spectral methods. Theoretical Population Biology, 79(4): 203-219.
[77]  58 Lyu J, Zhang SL, Dong Y, He WM, Zhang J, Deng XN, Zhang YS, Li X, Li BY, Huang WQ, Wan WT, Yu Y, Li Q, Li J, Liu X, Wang B, Tao DY, Zhang GY, Wang J, Xu X, Hu FY, Wang W. 2013. Analysis of elite variety tag SNPs reveals an important allele in upland rice. Nature Communications, 4: 2138.
[78]  59 Lyu J, Li BY, He WM, Zhang SL, Gou ZH, Zhang J, Meng LY, Li X, Tao DY, Huang WQ, Hu FY, Wang W. 2014. A genomic perspective on the important genetic mechanisms of upland adaptation of rice. BMC Plant Biology, 14(1): 160.
[79]  60 Mailund T, Dutheil JY, Hobolth A, Lunter G, Schierup MH. 2011. Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model. PLoS Genetics, 7(3): e1001319.
[80]  61 Mardis ER. 2008. The impact of next-generation sequencing technology on genetics. Trends in Genetics, 24(3): 133-140.
[81]  62 Marth GT, Czabarka E, Murvai J, Sherry ST. 2004. The allele frequency spectrum in genome-wide human variation data reveals signals of differeential demographic history in three large world populations. Genetics, 166(1): 351-372.
[82]  63 Nelson MR, Wegmann D, Ehm MG, Kessner D, Jean PS, Verzilli C, Shen JD, Tang ZZ, Bacanu SA, Fraser D, Warren L, Aponte J, Zawistowski M, Liu X, Zhang H, Zhang Y, Li J, Li Y, Li L, Woollard P, Topp S, Hall MD, Nangle K, Wang J, Abecasis G, Cardon LR, Zöllner S, Whittaker JC, Chissoe SL, Novembre J, Mooser V. 2012. An abundance of rare functional variants in 202 drug target genes sequenced in 14, 002 people. Science, 337(6090): 100-104.
[83]  64 Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante CD. 2005. Genomic scans for selective sweeps using SNP data. Genome Research, 15(11): 1566-1575.
[84]  65 Ohta T, Kimura M. 1975. The effect of selected linked locus on heterozygosity of neutral alleles (the hitch-hiking effect). Genetical Research, 25(3): 313-326.
[85]  85 Smith JM, Haigh J. 1974. The hitch-hiking effect of a favourable gene. Genetical Research, 23(1): 23-25.
[86]  86 Tajima F. 1989. Statistical methods for testing the neutral mutations hypothesis by DNA polymorphism. Genetics, 123(3): 585-595.
[87]  87 Tang K, Thornton KR, Stoneking M. 2007. A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biology, 5(7): e171.
[88]  88 Underhill PA, Passarino G, Lin AA, Shen P, Lahr MM, Foley RA, Oefner PJ, Cavalli-Sforza LL. 2001. The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Annals of Human Genetics, 65(1): 43-62.
[89]  89 Voight BF, Kudaravalli S, Wen XQ, Pritchard JK. 2006. A map of recent positive selection in the human genome. PLoS Biology, 4(3): e72.
[90]  90 Wang BB, Zhang YB, Zhang F, Lin HB, Wang XM, Wan N, Ye ZQ, Weng HY, Zhang LL, Li X, Yan JW, Wang PP, Wu TT, Cheng L, Wang J, Wang DM, Ma X, Yu J. 2011. On the origin of Tibetans and their genetic basis in adapting high-altitude environments. PLoS One, 6(2): e17002.
[91]  91 Wang GD, Zhai WW, Yang HC, Fan RX, Cao X, Zhong L, Wang L, Liu F, Wu H, Cheng LG, Poyarkov AD, Poyarkov NA Jr, Tang SS, Zhao WM, Gao Y, Lv XM, Irwin DM, Savolainen P, Wu CI, Zhang YP. 2013. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nature Communications, 4(5): 1860.
[92]  92 Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38(6): 1358-1370.
[93]  93 Williamson SH, Hernandez R, Fledel-Alon A, Zhu L, Nielsen R, Bustamante CD. 2005. Simultaneous inference of selection and population growth from patterns of variation in the human genome. Proceedings of the National Academy of Sciences of the United States of America, 102(22): 7882-7887.
[94]  94 Wollstein A, Stephan W. 2015. Inferring positive selection in humans from genomic data. Investigative Genetics, 6(1): 5.
[95]  95 Wooding S, Rogers A. 2002. The matrix coalescent and an application to human single-nucleotide polymorphisms. Genetics, 161(4): 1641-1650.
[96]  96 Xia QY, Guo YR, Zhang Z, Li D, Xuan ZL, Li Z, Dai FY, Li YR, Cheng DJ, Li RQ, Cheng TC, Jiang T, Becquet C, Xu X, Liu C, Zha XF, Fan W, Lin Y, Shen YH, Jiang L, Jensen J, Hellmann I, Tang S, Zhao P, Xu HF, Yu C, Zhang GJ, Li J, Cao JJ, Liu SP, He NJ, Zhou Y, Liu H, Zhao J, Ye C, Du ZH, Pan GQ, Zhao AC, Shao HJ, Zeng W, Wu P, Li CF, Pan MH, Li JJ, Yin XY, Li DW, Wang J, Zheng HS, Wang W, Zhang XQ, Li SG, Yang HM, Lu C, Nielsen R, Zhou ZY, Wang J, Xiang ZH, Wang J. 2009. Complete resequencing of 40 genomes reveals domestication events and genes in silkworm ( Bombyx ). Science, 326(5951): 433-436.
[97]  97 Xiang K, Ouzhuluobu, Peng Y, Yang ZH, Zhang XM, Cui CY, Zhang H, Li M, Zhang YF, Bianba, Gonggalanzi, Basang, Ciwangsangbu, Wu TY, Chen H, Shi H, Qi XB, Su B. 2013. Identification of a Tibetan-specific mutation in the hypoxic gene EGLN1 and its contribution to high-altitude adaptation. Molecular Biology and Evolution, 30(8): 1889-1898.
[98]  98 Xu SH, Li SL, Yang YJ, Tan JZ, Lou HY, Jin WF, Yang L, Pan XD, Wang JC, Shen YP, Wu BL, Wang HY, Jin L. 2011a. A genome-wide search for signals of high-altitude adaptation in Tibetans. Molecular Biology and Evolution, 28(2): 1003-1011.
[99]  99 Xu X, Liu X, Ge S, Jensen JD, Hu FY, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li JX, He WM, Zhang GJ, Zheng XM, Zhang FM, Li YR, Yu C, Kristiansen K, Zhang XQ, Wang J, Wright M, McCouch S, Nielsen R, Wang J, Wang W. 2011b. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology, 30(1): 105-111.
[100]  10 0 Yao YG, Kong QP, Bandelt HJ, Rgen, Kivisild T, Zhang YP. 2002. Phylogeographic differentiation of mitochondrial DNA in Han Chinese. The American Journal of Human Genetics, 70(3): 635-651.
[101]  10 1 Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZXP, Pool JE, Xu X, Jiang H, Vinckenbosch N, Korneliussen TS, Zheng HC, Liu T, He WM, Li K, Luo RB, Nie XF, Wu HL, Zhao MR, Cao HZ, Zou J, Shan Y, Li SZ, Yang Q, Asan, Ni PX, Tian G, Xu JM, Liu X, Jiang T, Wu RH, Zhou GY, Tang MF, Qin JJ, Wang T, Feng SJ, Li GH, Huasang, Luosang J, Wang W, Chen F, Wang YD, Zheng XG, Li Z, Bianba Z, Yang G, Wang XP, Tang SH, Gao GY, Chen Y, Luo Z, Gusang L, Cao Z, Zhang QH, Ouyang WH, Ren XL, Liang HQ, Zheng HS, Huang YB, Li JX, Bolund L, Kristiansen K, Li YR, Zhang Y, Zhang XQ, Li RQ, Li SG, Yang HM, Nielsen R, Wang J, Wang J. 2010. Sequencing of 50 human exomes reveals adaptation to high altitude. Science, 329(5987): 75-78.
[102]  10 2 Zhang XM, Qi XB, Yang ZH, Serey B, Sovannary T, Bunnath L, Aun HS, Samnom H, Zhang H, Lin Q, van Oven M, Shi H, Su B. 2013. Analysis of mitochondrial genome diversity identifies new and ancient maternal lineages in Cambodian aborigines. Nature Communications, 4: 2599.
[103]  10 3 Zhao M, Kong QP, Wang HW, Peng MS, Xie XD, Wang WZ, Jiayang, Duan JG, Cai MC, Zhao SN, Cidanpingcuo, Tu YQ, Wu SF, Yao YG, Bandelt HJ, Zhang YP. 2009. Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau. Proceedings of the National Academy of Sciences of the United States of America, 106(50): 21230-21235.
[104]  10 4 Zhou ZK, Jiang Y, Wang Z, Gou ZH, Lyu J, Li WY, Yu YJ, Shu LP, Zhao YJ, Ma YM, Fang C, Shen YT, Liu TF, Li CC, Li Q, Wu M, Wang M, Wu YS, Dong Y, Wan WT, Wang X, Ding ZL, Gao YD, Xiang H, Zhu BG, Lee SH, Wang W, Tian ZX. 2015. Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nature Biotechnology, 33(4): 408-414.

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