Der J P, Barker M S, Wickett N J,et al. De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum[J]. BMC Genomics, 2011, 12(1): 99.
[2]
Wang X F,He W L,Cai W J,et al. Analysis on Transcriptome Sequenced for Pinus massoniana[J]. Molecular Plant Breeding, 2013, 11(3): 385-392.
[3]
Li R Q, Zhu H M, Ruan J. De novo assembly of human genomes with massively parallel short read sequencing[J]. Genome Research, 2010, 20(2): 265-272.
[4]
Conesa A, G tz S,García Gómez J M,et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research[J]. Bioinformatics, 2005, 21(18): 3674-3676.
[5]
Ye J, Fang L, Zheng H,et al. WEGO: a web tool for plotting GO annotations[J]. Nucleic Acids Research, 2006, 34: 293-297.
[6]
Mortazavi A, Williams B A, McCue K,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq[J]. Nature Methods, 2008, 5(7): 621-628.
[7]
Lin P,Cao Y Q,Yao X H,et al. Ordinary oil-tea seeds four developmental period of the transcriptome analysis[J]. Molecular Plant Breeding , 2011, 9(4): 498-505.
[8]
Qi Y X,Liu Y B,Rong W H. RNA-Seq and its applications: a new technology for transcriptomics[J]. Hereditas, 2011, 33(11): 1191-1202.
[9]
Song J,Chen J,Chen H Y,et al.Research of Genetic Diversity of Tomato Using SSR Markers[J]. Journal of Shanghai Jiaotong University, 2006, 24(6): 524-528.
[10]
Chen H M,Li L Z,Wei X Y,et al.The development of wheat EST SSR markers, chromosome positioning and genetic mapping[J]. Chinese Science Bulletin, 2005, 50(20): 2208-2216.
[11]
Liu F,Wang Y S,Tian X L,et al.SSR Mining in Pepper (Capsicum annuum L. ) Transcriptome and the Polymorphism Analysis[J]. Acta Horticulturae Sinica , 2012, 39(1): 168-174.
[12]
Yang H B, Liu W Y, Kang W H,et al.Development of SNP markers linked to the L locus in Capsicum spp. by a comparative genetic analysis[J]. Molecular Breeding, 2009, 24(4): 433-446.
[13]
Yi G, Lee J M, Lee S,et al.Exploitation of pepper EST-SSRs and an SSR-based linkage map[J]. Theoretical and Applied Genetics, 2006, 114(1): 113-130.
[14]
Zeng L,Yuan Q H,Wang F,et al.Genetic diversity analysis of Agropyron germplasm resources by ISSR[J]. Acta Prataculturae Sinica, 2013, 22(1): 260-267.
[15]
Chen Q ,Yuan X J,He L Y.Screening molecular markers for heat tolerance and its relation to summer tolerance in tall fescue single plants[J]. Acta Prataculturae Sinica, 2013, 22(5): 84-95.
Xie X M,Lu X L.Puffins tares excellent characteristics of germplasm resources and its utilization value[J]. South China Agricultural University, 2004, 25: 64-67.
[24]
Chang P P,Zhong X S,Liu Z W. Comparison and analysis of the characteristics of mutant SP2008-3 and adalayd in seashore Paspalum[J]. Acta Prataculturae Sinica, 2012, 21(6): 207-212.
[25]
Chen J B,Zhu X Q,Li S,et al. Effects of saline water irrigation on growth of 7 genera and 11 species of warm season turfgrasses and their salinity tolerance difference[J]. Pratacultural Science, 2012, 29(8): 1185-1192.
[26]
Lu S Y,Guo Z F. Physiological responses of turfgrass to abiotic stresses[J]. Acta Prataculturae Sinica, 2003, 12(4): 7-13.
[27]
Cardona C A, Duncan R R, Lindstrom O. Low temperature tolerance assessment in paspalum[J]. Crop Science, 1997, 37(4): 1283-1291.
[28]
Carrow R N. Seashore paspalum ecotype responses to drought and root limiting stresses[J]. USGA Turfgrass and Environmental Research, 2005, 4(13): 1-9.
[29]
Huang B, Duncan R R, Carrow R N. Drought resistance mechanisms of seven warm-season turfgrasses under surface soil drying: I. Shoot response[J]. Crop Science, 1997, 37(6): 1858-1863.
[30]
Unruh, J B, Brecke B J, Partridge D E. Seashore paspalum performance to potable water[J]. USGA Turfgrass and Environmental Research, 2007, 6(23): 1-10.
[31]
Ye X Q,She J M,Liang L F,et al. Acquirement of Chilling Tolerant Mutant by Somatic Screening of Low Temperature in Sea Dallisgrass (Paspalum vaginatum Sw.)[J]. Acta Agrectir Sinica, 2010, 18(1): 97-102.
[32]
Liu G D,Luo L J. Chinese tropical forage plant resources[M]. Beijing: China Agricultural University Press, 1999: 176-179.
[33]
He X X,Liu Y M,Wang Z L. Morphological Characteristics and AFLP Analysis in Seashore Paspalum(Paspalum vaginatum)Varieties[J]. Acta Agrectir Sinica, 2011, 19(1): 164-170.
[34]
Xie X M,Lu X L,Sun X S.et al. Puffins tares the genetic diversity of RAPD molecular markers germplasm resources research[J]. South China Agricultural University, 2004, 25: 10-15.
[35]
Jing Z B,Wei L,Yu L,et al. Transcription sequencing and its application prospective on discovering the gene resources of forages[J]. Pratacultural Science, 2012, 28(7): 1364-1369.
[36]
Lockhart D J, Winzeler E A. Genomics, gene express and DNA arrays[J]. Nature, 2000, 405: 827-836.
[37]
Velculescu V E, Zhang L, Zhou W,et al. Characterization of the yeast transcriptome[J]. Cell, 1997, 88(2): 243-251.
[38]
Alagna F D, Agostino N, Torchia L,et al. Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development[J]. BMC Genomics, 2009, 10: 399.
[39]
Barakat A, DiLoreto D S, Zhang Y,et al. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection[J]. BMC Plant Biology, 2009, 9: 51.
[40]
Dassanayake M, Haas J S, Bohnert H J,et al. Shedding light on an extremophile lifestyle through transcriptomics[J]. New Phytologist, 2009, 183(3): 764-775.
[41]
Maher C A, Kumar Sinha C, Cao X,et al. Transcriptome sequencing to detect gene fusions in cancer[J]. Nature, 2009, 458: 97-101.
[42]
Wang E T, Sandberg R, Luo S,et al. Alternative isoform regulation in human tissue transcriptomes[J]. Nature, 2008, 456: 470-476.
[43]
Zhang Z,Gao Z H,Wei J H,et al.Three years have white costus mechanical damage the transcriptome studies[J]. Pharmaceutical Journal, 2012, 47(8): 1106-1110.
[44]
Yang N,Zhao K G,Chen L Q. Wax plum transcriptome data analysis and secondary metabolites synthesis ways[J]. Beijing Forestry University, 2012, 34(1): 104-107.
[45]
Franssen S U, Shrestha R P, Brautigam A,et al. Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing[J]. BMC Genomics, 2011, 12: 227.
Cardona C A, Duncan R R, Lindstrom O. Low temperature tolerance assessment in paspalum[J]. Crop Science, 1997, 37(4): 1283-1291.
[48]
Carrow R N. Seashore paspalum ecotype responses to drought and root limiting stresses[J]. USGA Turfgrass and Environmental Research, 2005, 4(13): 1-9.
[49]
Huang B, Duncan R R, Carrow R N. Drought resistance mechanisms of seven warm-season turfgrasses under surface soil drying: I. Shoot response[J]. Crop Science, 1997, 37(6): 1858-1863.
[50]
Unruh, J B, Brecke B J, Partridge D E. Seashore paspalum performance to potable water[J]. USGA Turfgrass and Environmental Research, 2007, 6(23): 1-10.
Lockhart D J, Winzeler E A. Genomics, gene express and DNA arrays[J]. Nature, 2000, 405: 827-836.
[57]
Velculescu V E, Zhang L, Zhou W,et al. Characterization of the yeast transcriptome[J]. Cell, 1997, 88(2): 243-251.
[58]
Alagna F D, Agostino N, Torchia L,et al. Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development[J]. BMC Genomics, 2009, 10: 399.
[59]
Barakat A, DiLoreto D S, Zhang Y,et al. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection[J]. BMC Plant Biology, 2009, 9: 51.
[60]
Dassanayake M, Haas J S, Bohnert H J,et al. Shedding light on an extremophile lifestyle through transcriptomics[J]. New Phytologist, 2009, 183(3): 764-775.
[61]
Maher C A, Kumar-Sinha C, Cao X,et al. Transcriptome sequencing to detect gene fusions in cancer[J]. Nature, 2009, 458: 97-101.
[62]
Wang E T, Sandberg R, Luo S,et al. Alternative isoform regulation in human tissue transcriptomes[J]. Nature, 2008, 456: 470-476.
Franssen S U, Shrestha R P, Brautigam A,et al. Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing[J]. BMC Genomics, 2011, 12: 227.
[66]
Der J P, Barker M S, Wickett N J,et al. De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum[J]. BMC Genomics, 2011, 12(1): 99.
Li R Q, Zhu H M, Ruan J. De novo assembly of human genomes with massively parallel short read sequencing[J]. Genome Research, 2010, 20(2): 265-272.
[69]
Conesa A, Gtz S, García-Gómez J M,et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research[J]. Bioinformatics, 2005, 21(18): 3674-3676.
[70]
Ye J, Fang L, Zheng H,et al. WEGO: a web tool for plotting GO annotations[J]. Nucleic Acids Research, 2006, 34: 293-297.
[71]
Mortazavi A, Williams B A, McCue K,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq[J]. Nature Methods, 2008, 5(7): 621-628.
Yang H B, Liu W Y, Kang W H,et al. Development of SNP markers linked to the L locus in Capsicum spp. by a comparative genetic analysis[J]. Molecular Breeding, 2009, 24(4): 433-446.
[76]
Yi G, Lee J M, Lee S,et al. Exploitation of pepper EST-SSRs and an SSR-based linkage map[J]. Theoretical and Applied Genetics, 2006, 114(1): 113-130.