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棉花学报  2015 

基于10个棉花腺体相关材料转录组的EST-SSR标记开发

DOI: 1002-7807(2015)01-0001-08, PP. 1-8

Keywords: 棉花,EST-SSR标记,多态性,色素腺体

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Abstract:

棉花是重要的经济作物,但有毒棉酚的存在,使棉子得不到充分的利用,所以低酚棉育种是棉花育种的重要内容之一。色素腺体是棉酚的储存器官,开发功能型分子标记,加密棉花遗传图谱对色素腺体和其他重要性状相关基因的研究具有重要作用。本试验以10个有腺体和无腺体材料转录组信息为基础开发EST-SSR标记,在12895条1kb以上的Unigene中共搜索到1546个SSR位点,发生频率和平均距离分别是11.99%和15.99kb。得到的EST-SSR中,二碱基和三碱基重复是主要的重复类型,分别占30.85%和48.97%,AT/TA和GAA/CTT分别是二碱基和三碱基的优势重复类型。对长度≥20bp的SSR共设计合成了56对引物,在这10个材料中进行检测,能扩增出清晰条带的有38对,占67.86%,其中呈多态性的有9对,占23.68%,并对其所在的Unigene功能和表达量进行了初步分析。本研究进一步证明了棉花EST-SSR标记开发的可行性,并且为棉花高密度遗传图谱和腺体相关基因的研究奠定了基础。

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