11 Takano M, Inagaki N, Xie X, et al. Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice. Proc Natl Acad Sci USA, 2009, 106: 14705-14710？？
[6]
12 Zhong S W, Zhao M T, Shi T Y, et al. EIN3/EIL1 cooperate with PIF1 to prevent photo-oxidation and to promote greening of Arabidopsis seedlings. Proc Acad Natl Sci USA, 2009, 106: 21431-21436？？
15 Oh E, Kang H, Yamaguchi S, et al. Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell, 2009, 21: 403-419？？
[9]
18 Sch？fer E, Bowler C. Phytochrome-mediated photoperception and signal transduction in higher plants. 2002, EMBO J, 3: 1042-1048
[10]
20 Dehesh K, Tepperman J, Christensen A H, et al. phyB is evolutionarily conserved and constitutively expressed in rice seedling shoots. Mol Gen Genet, 1991, 225: 305-313？？
[11]
23 Xie X Z, Shinomura T, Inagaki N, et al. Phytochrome-mediated inhibition of coleoptile growth in rice: Age-dependency and action spectra. Photochem Photobiol, 2007, 83: 131-138？？
[12]
25 Xie X Z, Xue Y J, Zhou J J, et al. Phytochromes regulate SA and JA signaling pathways in rice and are required for developmentally controlled resistance to Magnaporthe grisea. Mol Plant, 2011, 4: 688-696？？
[13]
27 Kim S T, Sun Y K, Wang Y M, et al. Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds. Proteomics, 2008, 8: 3577-3587？？
[14]
28 Yang P F, Li X J, Wang X Q, et al. Proteomics analysis of rice (Oryza sativa) seeds during germination. Proteomics, 2007, 7: 3358-3368？？
[15]
31 Seo M, Hanada A, Kuwahara A, et al. Regulation of hormone metabolism in Arabidopsis seeds: Phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. Plant J, 2006, 48: 354-366？？
[16]
1 Suetsugu N, Wada M. Chloroplast photorelocation movement mediated by phototropin family proteins in green plants. Biol Chem, 2007, 388: 927-935？？
[17]
2 Franklin K A, Quail P H. Phytochrome functions in Arabidopsis development. J Exp Bot, 2010, 61: 11-24？？
8 Takano M, Inagaki N, Xie X Z, et al. Distinct and cooperative functions of phytochromes A, B and C in the control of deetiolation and flowering in rice. Plant Cell, 2005, 17: 3311-3325？？
[22]
13 Lorrain S, Allen T, Duek P D, et al. Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors. Plant J, 2008, 53: 312-323
[23]
16 Kim D H, Yamaguchi S, Lim S, et al. SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. Plant Cell, 2008, 20: 1260-1277
[24]
17 Chattopadhyay S, Ang L H, Puente P, et al. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell, 1998, 10: 673-683
[25]
19 Chen H, Zhang J, Neff M M, et al. Integration of light and abscisic acid signaling during seed germination and early seedling development. Proc Natl Acad Sci USA, 2008, 105: 44954-45000
[26]
21 Kay S A, Keith B, Shinozaki K, et al. The sequence of the rice phytochrome gene. Nucleic Acids Res, 1989, 17: 2865-2866？？
[27]
22 Basu D, Dehesh K, Schneider-Poetsch H J, et al. Rice PHYC gene: Structure, expression, map position and evolution. Plant Mol Biol, 2000, 44: 27-42？？
26 Takano M, Kanegae H, Shinomura T, et al. Isolation and characterization of rice phytochrome A mutants. Plant Cell, 2001, 13: 521-534
[30]
29 Bailly C. Active oxygen species and antioxidants in seed biology. Seed Sci Res, 2004, 14: 93-107？？
[31]
30 Liu J, Zhang F, Zhou J, et al. Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice. Plant Mol Biol, 2012, 78: 289-300？？
[32]
32 Cho J N, Ryu J Y, Jeong Y M, et al. Control of seed germination by light-induced histone arginine demethylation activity. Dev Cell, 2012, 22: 736-748？？
