Zhao Xueming(赵学明), Wang Qingzhao(王庆昭). Synthetic biology: fundamentals, advances and prospect[J]. Frontier Science (前沿科学), 2007,3:56-66
[2]
Lin Qishui(林其谁). Synthetic biology[J]. Chinese Bulletin of Life Sciences (生命科学), 2005, 17(5): 384-386
[3]
Ling Yan(凌焱), Duan Haiqing(段海清), Chen Huipeng(陈惠鹏). Synthetic biology[J]. Bulletin of the Academy of Military Medical Sciences (军事医学科学院院刊), 2006, 3(6): 66-69
[4]
Zhang Chunting(张春霆). Advances in synthetic biology studies[J]. Bulletin of National Natural Science Foundation of China (中国科学基金), 2009(2): 65-69
[5]
Liu Duo(刘夺), Du Jin(杜瑾), Zhao Guangrong(赵广荣), Yuan Yingjin(元英进). Applications of synthetic biology in medicine and energy[J]. CIESC Journal (化工学报), 2011, 62(9): 2391-2397
[6]
Du Jin(杜瑾), Liu Duo(刘夺), Zhao Guangrong(赵广荣), Yuan Yingjin(元英进). General situation on the disciplinary development in synthetic biology[J]. Bulletin of National Natural Science Foundation of China (中国科学基金), 2011(3): 143-147
[7]
Gardner T S, Cantor C R, Collins J J. Construction of a genetic toggle switch in Escherichia coli[J]. Nature, 2000, 403: 339-342
Elowitz M B, Leibler S. A synthetic oscillatory network of transcriptional regulators[J]. Nature, 2000, 403: 335-338
[10]
Ro D K, Paradise E M, Ouellet M, Fisher K J, Newman K L, Ndungu J M, Ho K A, Eachus R A, Ham T S, Kirby J, Chang M C, Withers S T, Shiba Y, Sarpong R, Keasling J D. Production of the antimalarial drug precursor artemisinic acid in engineered yeast[J]. Nature, 2006, 440: 940-943
[11]
Hong S H, Hegde M, Kim J, Wang X, Jayaraman A, Wood T K. Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device[J]. Nat. Commun., 2012, 3: 613
[12]
Shou W, Ram S, Vilar J M G. Synthetic cooperation in engineered yeast populations[J]. Proc. Natl. Acad. Sci. USA, 2007, 104: 1877-1882
[13]
Shin H D, McClendon S, Vo T, Chen R R. Escherichia coli binary culture engineered for direct fermentation of hemicellulose to a biofuel[J]. Appl. Environ. Microbiol., 2010, 76: 8150-8159
[14]
Tsai S L, Goyal G, Chen W. Surface display of a functional minicellulosome by intracellular complementation using a synthetic yeast consortium and its application to cellulose hydrolysis and ethanol production[J]. Appl. Environ. Microbiol., 2010, 76: 7514-7520
[15]
Goyal G, Tsai S L, Madan B, DaSilva N A, Chen W. Simultaneous cell growth and ethanol production from cellulose by an engineered yeast consortium displaying a functional mini-cellulosome[J]. Microb. Cell Fact., 2011, 10: 89
[16]
Minty J J, Singer M E, Scholz S A, Bae C H, Ahn J H, Foster C E, Liao J C, Lin X N. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass[J]. Proc. Natl. Acad. Sci. USA, 2013, doi: 10.1073/pnas.1218447110
[17]
Duan F, March J C. Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model[J]. Proc. Natl. Acad. Sci. USA, 2010, 107: 11260-11264
[18]
Saeidi N, Wong C K, Lo T M, Nguyen H X, Ling H, Leong S S, Poh C L, Chang M W. Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen[J]. Mol. Syst. Biol., 2011, 7: 521
[19]
Perkel J M. Streamlined engineering for synthetic biology[J]. Nature Methods, 2012, 10: 39
[20]
Purnick P E, Weiss R. The second wave of synthetic biology: from modules to systems[J]. Nat. Rev. Mol. Cell Biol., 2009, 10: 410-422
[21]
Brenner K, You L, Arnold F H. Engineering microbial consortia: a new frontier in synthetic biology[J]. Trends Biotechnol., 2008, 26: 483-489
[22]
Wintermute E H, Silver P A. Dynamics in the mixed microbial concourse[J]. Genes Dev., 2010, 24: 2603-2614
[23]
Gilbert E, Walker A, Keasling J. A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion[J]. Appl. Microbiol. Biotechnol., 2003, 61: 77-81
[24]
Tamsir A, Tabor J J, Voigt C A. Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires'[J]. Nature, 2011, 469: 212-215
[25]
Regot S, Macia J, Conde N, Furukawa K, Kjellén J, Peeters T, Hohmann S, de Nadal E, Posas F, Solé R. Distributed biological computation with multicellular engineered networks[J]. Nature, 2010, 469: 207-211
[26]
Ji W, Shi H, Zhang H, Sun R, Xi J, Wen D, Feng J, Chen Y, Qin X, Ma Y, Luo W, Deng L, Lin H, Yu R, Ouyang Q. A formalized design process for bacterial consortia that perform logic computing[J]. PLoS One, 2013, 8: e57482
[27]
Macía J, Posas F, Solé R V. Distributed computation: the new wave of synthetic biology devices[J]. Trends Biotechnol., 2012, 30: 342-349
[28]
Eiteman M A, Lee S A, Altman E. A co-fermentation strategy to consume sugar mixtures effectively[J]. J. Biol. Eng., 2008, 2: 3
[29]
Atsumi S, Hanai T, Liao J C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels[J]. Nature, 2008, 451: 86-89
[30]
Ajikumar P K, Xiao W H, Tyo K E, Wang Y, Simeon F, Leonard E, Mucha O, Phon T H, Pfeifer B, Stephanopoulos G. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli[J]. Science, 2010, 330: 70-74
[31]
Tian J, Gong H, Sheng N, Zhou X, Gulari E, Gao X, Church G. Accurate multiplex gene synthesis from programmable DNA microchips[J]. Nature, 2004, 432: 1050-1054
[32]
Kosuri S, Eroshenko N, LeProust E M, Super M, Way J, Li J B, Church G M. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips[J]. Nat. Biotechnol., 2010, 28: 1295-1299
[33]
Matzas M, St？hler P F, Kefer N, Siebelt N, Boisguérin V, Leonard J T, Keller A, St？hler C F, H？berle P, Gharizadeh B. High-fidelity gene synthesis by retrieval of sequence-verified DNA identified using high-throughput pyrosequencing[J]. Nat. Biotechnol., 2010, 28: 1291-1294
[34]
Gibson D G, Benders G A, Axelrod K C, Zaveri J, Algire M A, Moodie M, Montague M G, Venter J C, Smith H O, Hutchison C A 3rd. One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome[J]. Proc. Natl. Acad. Sci. USA, 2008, 105: 20404-20409
[35]
Gibson D G, Benders G A, Andrews-Pfannkoch C, Denisova E A, Baden-Tillson H, Zaveri J, Stockwell T B, Brownley A, Thomas D W, Algire M A, Merryman C, Young L, Noskov V N, Glass J I, Venter J C, Hutchison C A 3rd, Smith H O. Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome[J]. Science, 2008, 319: 1215-1220
[36]
Shao Z, Zhao H. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways[J]. Nucleic. Acids. Res., 2009, 37: e16
[37]
Shao Z, Luo Y, Zhao H. Rapid characterization and engineering of natural product biosynthetic pathways via DNA assembler[J]. Mol. Biosyst., 2011, 7: 1056-1059
[38]
Gibson D G, Glass J I, Lartigue C, Noskov V N, Chuang R Y, Algire M A, Benders G A, Montague M G, Ma L, Moodie M M, Merryman C, Vashee S, Krishnakumar R, Assad-Garcia N, Andrews-Pfannkoch C, Denisova E A, Young L, Qi Z Q, Segall-Shapiro T H, Calvey C H, Parmar P P, Hutchison C A 3rd, Smith H O, Venter J C. Creation of a bacterial cell controlled by a chemically synthesized genome[J]. Science, 2010, 329: 52-56
[39]
Dymond J S, Richardson S M, Coombes C E, Babatz T, Muller H, Annaluru N, Blake W J, Schwerzmann J W, Dai J, Lindstrom D L, Boeke A C, Gottschling D E, Chandrasegaran S, Bader J S, Boeke J D. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design[J]. Nature, 2011, 477: 471-476
[40]
Gerchman Y, Weiss R. Teaching bacteria a new language[J]. Proc. Natl. Acad. Sci. USA, 2004, 101: 2221-2222
[41]
Shong J, Jimenez Diaz M R, Collins C H. Towards synthetic microbial consortia for bioprocessing[J]. Curr. Opin. Biotechnol., 2012, 23: 798-802
[42]
Basu S, Mehreja R, Thiberge S, Chen M T, Weiss R. Spatiotemporal control of gene expression with pulse-generating networks[J]. Proc. Natl. Acad. Sci. USA, 2004, 101: 6355-6360
[43]
Basu S, Gerchman Y, Collins C H, Arnold F H, Weiss R. A synthetic multicellular system for programmed pattern formation[J]. Nature, 2005, 434: 1130-1134
[44]
Brenner K, Karig D K, Weiss R, Arnold F H. Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium[J]. Proc. Natl. Acad. Sci. USA, 2007, 104: 17300-17304
[45]
Balagaddé F K, Song H, Ozaki J, Collins C H, Barnet M, Arnold F H, Quake S R, You L. A synthetic Escherichia coli predator–prey ecosystem[J]. Mol. Syst. Biol., 2008, 4: 187
[46]
Hu B, Du J, Zou R Y, Yuan Y J. An environment-sensitive synthetic microbial ecosystem[J]. PLoS One, 2010, 5: e10619
[47]
Chuang J S, Rivoire O, Leibler S. Cooperation and Hamilton's rule in a simple synthetic microbial system[J]. Mol. Syst. Biol., 2010, 6: 398
[48]
Kerner A, Park J, Williams A, Lin X N. A programmable Escherichia coli consortium via tunable symbiosis[J]. PLoS One, 2012, 7: e34032
[49]
Kubo I, Hosoda K, Suzuki S, Yamamoto K, Kihara K, Mori K, Yomo T. Construction of bacteria-eukaryote synthetic mutualism[J]. Biosystems, 2013,113:66-71
[50]
Weber W, Baba D E, Fussenegger M. Synthetic ecosystems based on airborne inter- and intrakingdom communication[J]. Proc. Natl. Acad. Sci. USA, 2007, 104: 10435-10440
[51]
Prindle A, Samayoa P, Razinkov I, Danino T, Tsimring L S, Hasty J. A sensing array of radically coupled genetic ‘biopixels'[J]. Nature, 2012, 481: 39-44
[52]
Song H, Payne S, Gray M, You L. Spatiotemporal modulation of biodiversity in a synthetic chemical-mediated ecosystem[J]. Nat. Chem. Biol., 2009, 5: 929-935
[53]
Li B, You L. Synthetic biology: Division of logic labour[J]. Nature, 2011, 469: 171-172
