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核农学报  2014 

植物DNA错配修复缺陷及其对诱变育种的意义

DOI: 10.11869/j.issn.100-8551.2014.09.1606, PP. 1606-1614

Keywords: 植物,错配修复,功能缺陷,诱变育种

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Abstract:

DNA错配修复(MMR)是DNA损伤修复的一个重要途径,主要司职于DNA合成、遗传重组及损伤过程中新发生的单个及少数碱基的缺失、插入及错配的修复,对维持基因组稳定性和DNA复制保真度至关重要。原核生物的MMR系统主要由MutS、MutH和MutL组成,在高等植物中也鉴定出MutS和MutL的同源物,但未发现MutH。本文介绍了近年来有关植物DNA错配修复及相关基因功能的研究进展,探讨了植物MMR功能缺陷产生的途径及其对植物诱变育种的意义,为进一步利用MMR缺陷突变体进行植物诱发突变与诱变育种研究提供借鉴。

References

[1]  Cerovic G, Bozin D, Dimitrijevic B. Mismatch-specific DNA breakdown in nuclear extract from tobacco (Nicotiana tabacum) callus [J]. Plant Molecular Biology, 1991, 17(4): 887-894
[2]  Tam S M, Samipak S, Britt A, Chetelat R T. Characterization and comparative sequence analysis of the DNA mismatch repair MSH2 and MSH7 genes from tomato [J]. Genetica, 2009, 137(3), 341-354
[3]  Singh S K, Roy S, Choudhury S R, Choudhury, S R, Sengupta D N. DNA repair and recombination in higher plants: insights from comparative genomics of Arabidopsis and rice [J]. BMC Genomics, 2010, 11(1):443 doi:10.1186/1471-2164-11-443
[4]  Ade J, Belzile F, Philippe H, Doutriaux M P. Four mismatch repair paralogues coexist in Arabidopsis thaliana: AtMSH2, AtMSH3, AtMSH6-1 and AtMSH6-2 [J]. Molecular and General Genetics, 1999, 262(2): 239-249
[5]  Culligan K M, Hays J B. Arabidopsis MutS homologs—AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7—form three distinct protein heterodimers with different specificities for mismatched DNA [J]. The Plant Cell, 2000, 12(6): 991-1002
[6]  Abdelnoor R V, Yule R, Elo A, Christensen A C, Meyer-Gauen G, Mackenzie S A. Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS [J]. Proceedings of the National Academy of Sciences of the United States of America, 2003, 100(10): 5968-5973
[7]  Higgins J D, Armstrong S J, Franklin F C H, Jones G H. The Arabidopsis MutS homolog AtMSH4 functions at an early step in recombination: evidence for two classes of recombination in Arabidopsis [J]. Genes and Development, 2004, 18(20), 2557-2570
[8]  Lu X, Liu X, An L, Zhang W, Sun J, Pei H, Meng H, Fan Y, Zhang C. The Arabidopsis MutS homolog AtMSH5 is required for normal meiosis [J]. Cell Research, 2008, 18(5):589-599
[9]  Higgins J D, Vignard J, Mercier R, Pugh AG, Franklin FC, Jones GH. AtMSH5 partners AtMSH4 in the class I meiotic crossover pathway in Arabidopsis thaliana, but is not required for synapsis [J]. The Plant Journal, 2008, 55(1):28-39
[10]  Korzun V, Borner A, Siebert R, Malyshev S, Hilpert M, Kunze R, Puchta H. Chromosomal location and genetic mapping of the mismatch repair gene homologs MSH2, MSH3 and MSH6 in rye and wheat [J]. Genome, 1999, 42(6):1255-1257
[11]  Dong C, Whitford R, Langridge P A. DNA mismatch repair gene links to the Ph2 locus in wheat [J]. Genome, 2002, 45(1):116-124
[12]  Dong Z, Wang H, Dong Y, Wang Y, Liu W, Miao G, Liu B. Extensive microsatellite variation in rice induced by introgression from wild rice (Zizania latifolia Griseb.) [J]. PloS One, 2013, 8(4): e62317
[13]  Horwath M, Kramer W, Kunze R. Structure and expression of the Zea mays mutS-homologs Mus1 and Mus2 [J]. Theoretical and Applied Genetics, 2002, 105(2-3): 423-430
[14]  Lloyd A H, Milligan A S, Langridge P, Able J A. TaMSH7: a cereal mismatch repair gene that affects fertility in transgenic barley (Hordeum vulgare L.) [J]. BMC Plant Biology, 2007, 7:67 doi:10.1186/1471-2229-7-67
[15]  Brun F, Gonneau M, Doutriaux M P, Laloue M, Nogué F. Cloning of the PpMSH2 cDNA of Physcomitrella patens, a moss in which gene targeting by homologous recombination occurs at high frequency [J]. Biochimie, 2001, 83(11), 1003-1008
[16]  Alou A H, Jean M, Domingue O, Belzile F J. Structure and expression of AtPMS1, the Arabidopsis ortholog of the yeast DNA repair gene PMS1 [J]. Plant Science, 2004, 167(3): 447-456
[17]  Jean M, Pelletier J, Hilpert M, Belzile F, Kunze R. Isolation and characterization of AtMLH1, a MutL homologue from Arabidopsis thaliana [J]. Molecular and General Genetics, 1999, 262(4-5): 633-642
[18]  Jackson N, Sanchez-Moran E, Buckling E, Armstrong S J, Jones GH, Franklin F C H. Reduced meiotic crossovers and delayed prophase I progression in AtMLH3-deficient Arabidopsis [J]. The EMBO Journal, 2006, 25(6): 1315-1323
[19]  Zhang M, Wang H, Dong Z, Qi B, Xu K, Liu B. Tissue culture-induced variation at simple sequence repeats in sorghum (Sorghum bicolor L.) is genotype-dependent and associated with down-regulated expression of a mismatch repair gene, MLH3 [J]. Plant Cell Reports, 2010, 29(1), 51-59
[20]  Lhuissier F G, Offenberg H H, Wittich P E, Vischer N O, Heyting C. The mismatch repair protein MLH1 marks a subset of strongly interfering crossovers in tomato [J]. The Plant Cell, 2007, 19(3), 862-876
[21]  Gómez R, Spampinato C P. Mismatch recognition function of Arabidopsis thaliana MutSγ [J]. DNA Repair, 2013, 12(4):257-264
[22]  Hays J B. Arabidopsis thaliana, a versatile model system for study of eukaryotic genome-maintenance functions [J]. DNA Repair, 2002, 1(8): 579-600
[23]  Small I D, Isaac P G, Leaver C J. Stoichiometric differences in DNA molecules containing the atpA gene suggest mechanisms for the generation of mitochondrial genome diversity in maize [J]. The EMBO Journal, 1987, 6(4): 865
[24]  Janska H, Sarria R, Woloszynska M, Arrieta-Montiel M, Mackenzie S A. Stoichiometric shifts in the common bean mitochondrial genome leading to male sterility and spontaneous reversion to fertility [J]. The Plant Cell, 1998, 10(7): 1163-1180
[25]  Arrieta-Montiel M, Lyznik A, Woloszynska M, Janska H, Tohme J, Mackenzie S. Tracing evolutionary and developmental implications of mitochondrial stoichiometric shifting in the common bean [J]. Genetics, 2001, 158(2): 851-864
[26]  Martínez-Zapater J M, Gil P, Capel J, Somerville C R. Mutations at the Arabidopsis CHM locus promote rearrangements of the mitochondrial genome [J]. The Plant Cell , 1992, 4(8): 889-899
[27]  Redei G P. Extra-chromosomal mutability determined by a nuclear gene locus in Arabidopsis [J]. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, 1973, 18(2): 149-162
[28]  Lario L D, Ramirez-Parra E, Gutierrez C, Casati P, Spampinato C P. Regulation of plant MSH2 and MSH6 genes in the UV-B-induced DNA damage response [J]. Journal of Experimental Botany, 2011, 62(8): 2925-2937
[29]  Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M. Phenome analysis in plant species using loss-of-function and gain-of-function mutants [J]. Plant and Cell Physiology, 2009, 50(7): 1215-1231
[30]  Leonard J M, Bollmann S R, Hays J B. Reduction of stability of Arabidopsis genomic and transgenic DNA-repeat sequences (microsatellites) by inactivation of AtMSH2 mismatch-repair function [J]. Plant Physiology, 2003, 133(1): 328-338
[31]  Hoffman P D, Leonard J M, Lindberg G E, Bollmann S R, Hays J B. Rapid accumulation of mutations during seed-to-seed propagation Arabidopsis of mismatch-repair-defective [J]. Genes and Development, 2004, 18(21): 2676-2685
[32]  Dion E, Li L, Jean M, Belzile F. An Arabidopsis MLH1 mutant exhibits reproductive defects and reveals a dual role for this gene in mitotic recombination [J]. The Plant Journal, 2007, 51(3), 431-440
[33]  Li L, Dion E, Richard G, Domingue O, Jean M, Belzile F J. The Arabidopsis DNA mismatch repair gene PMS1 restricts somatic recombination between homeologous sequences [J]. Plant Molecular Biology, 2009, 69(6): 675-684
[34]  李瑞清,富昊伟,崔海瑞,张华丽,舒庆尧. 水稻DNA 损伤修复同源基因纯合突变系的鉴定 [J]. 核农学报,2012,26(3) : 409-415
[35]  Chao Q, Sullivan C D, Geta J M, Gleason K B, Sass P M, Nicolaides N C, Grasso L. Rapid generation of plant traits via regulation of DNA mismatch repair [J]. Plant Biotechnology Journal, 2005, 3(4):399-407
[36]  Tam S M, Hays J B, Chetelat R T. Effects of suppressing the DNA mismatch repair system on homeologous recombination in tomato [J]. Theoretical and Applied Genetics, 2011, 123(8): 1445-1458
[37]  Xu J, Li M, Chen L, Wu G, Li H. Rapid generation of rice mutants via the dominant negative suppression of the mismatch repair protein OsPMS1 [J]. Theoretical and Applied Genetics, 2012, 125(5): 975-986
[38]  Van Marcke I, Angenon G. Genomic stability in Nicotiana plants upon silencing of the mismatch repair gene MSH2 [J]. Plant Biotechnology Reports, 2013, DOI: 10.1007/s11816-013-0285-0
[39]  Bollmann S R, Tominey C M, Hoffman P D, Hoffman T M C, Hays J B. Reversion-reporter transgenes to analyze all six base substitution pathways in Arabidopsis [J]. Plant Physiology, 2011,155(3):1286-1300
[40]  Ossowski S, Schneeberger K, Lucas-Lledoó J I, Warthmann N, Clark R M, Shaw R G, Weigel D, Lynch M. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana [J]. Science, 2010, 327(5961):92-94
[41]  Van der Auwera G, Baute J, Bauwens M, Peck I, Piette D, Pycke M, Asselman P, Depicker A. Development and application of novel constructs to score C:G-to -T:A transitions and homologous recombination in Arabidopsis [J]. Plant Physiology, 2008, 146 (1): 22-31
[42]  华孝挺, 田兵, 华跃进. 耐辐射奇球菌同源重组修复机制研究新进展[J]. 核农学报, 2010, 24(6): 1192-1197
[43]  周庆, 张新觉, 徐虹, 徐步进, 华跃进. 耐辐射奇球菌 RadA 蛋白参与DNA损伤修复过程[J].科学通报, 2006,51(20): 2381-2386
[44]  Xu G, Wang L, Chen H, Lu H, Ying N, Tian B, Hua, Y. RecO is essential for DNA damage repair in Deinococcus radiodurans [J]. Journal of Bacteriology, 2008, 190(7): 2624-2628
[45]  Xie C H, Guo J H, Cheng B J, Yu Z L. Preliminary studies on base substitutions and repair of DNA mismatch damage stimulated by low energy N+ ion beam implantation in Escherichia coli [J]. Plasma Science and Technology, 2003, 5(1): 1677-1682
[46]  Young L C, Thulien K J, Campbell M R, Tron V A, Andrew S E. DNA mismatch repair proteins promote apoptosis and suppress tumorigenesis in response to UVB irradiation: an in vivo study [J]. Carcinogenesis, 2004, 25(10):1821-1827
[47]  Colbert T, Till, B J, Tompa R, Reynolds S, Steine M N, Yeung A T, McCallum C M, Comai L, Henikoff S. High-throughput screening for induced point mutations [J]. Plant Physiology, 2001, 126(2):480-484
[48]  McCallum C M, Comai L, Greene E A, Henikoff S. Targeted screening for induced mutations [J]. Nature Biotechnology, 2000,18(4):455-457
[49]  FAO/IAEA, Mutant Variety Database[DB/OL].http://mvgs.iaea.org/AboutMutantVarities.aspx, 2013-10-05/2010
[50]  Lafleuriel J, Degroote F, Depeiges A, Picard G. Impact of the loss of AtMSH2 on double-strand break-induced recombination between highly diverged homeologous sequences in Arabidopsis thaliana germinal tissues [J] Plant Molecular Biology, 2007, 63(6): 833-846
[51]  Emmanuel E, Yehuda E, Melamed-Bessudo C, Avivi-Ragolsky N, Levy A. The role of AtMSH2 in homologous recombination in Arabidopsis thaliana [J]. EMBO Reports, 2005, 7(1): 100-105
[52]  Li L, Jean M, Belzile F. The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis [J]. The Plant Journal, 2006, 45(6): 908-916
[53]  Culligan K M, Hays J B. DNA mismatch repair in plants (an Arabidopsis thaliana gene that predicts a protein belonging to the MSH2 subfamily of eukaryotic MutS homologs) [J]. Plant Physiology, 1997, 115(2): 833-839
[54]  Bray C M, West C E. DNA repair mechanisms in plants: crucial sensors and effectors for the maintenance of genome integrity [J]. New Phytologist, 2005, 168(3): 511-528
[55]  Yang W. Structure and mechanism for DNA lesion recognition [J]. Cell Research, 2008, 18(1):184-19
[56]  Jriecny J. The multifaceted mismatch-repair system [J]. Nature Reviews Molecular Cell Biology, 2006, 7(5):335-346
[57]  Spampinato C P, Gomez R L, Galles C, Lario L D. From bacteria to plants: a compendium of mismatch repair assays [J]. Mutation Research/Reviews in Mutation Research, 2009, 682(2): 110-128
[58]  Hombauer H, Srivatsan A, Putnam C D, Kolodner R D. Mismatch repair, but not heteroduplex rejection, is temporally coupled to DNA replication [J]. Science, 2011, 334(6063): 1713-1716
[59]  Shen Y, Koh K D, Weiss B, Storici F. Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H [J]. Nature Structural & Molecular Biology, 2011, 19(1): 98-104
[60]  Modrich P. Mechanisms and biological effects of mismatch repair [J]. Annual Review of Genetics, 1991, 25(1): 229-253
[61]  Fukui K. DNA mismatch repair in eukaryotes and bacteria [J]. Journal of Nucleic Acids, 2010, doi:10.4061/2010/260512
[62]  Iyer R R, Pluciennik A, Burdett V, Modrich P L. DNA mismatch repair: functions and mechanisms [J]. Chemical Reviews, 2006, 106(2):302-323
[63]  Boiteux S, Jinks-Robertson S. DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae [J]. Genetics, 2013, 193(4): 1025-1064
[64]  Li G M. Mechanisms and functions of DNA mismatch repair [J]. Cell Research, 2007, 18(1): 85-98
[65]  Hsieh P, Yamane K. DNA mismatch repair: molecular mechanism, cancer, and ageing [J]. Mechanisms of Ageing and Development, 2008, 129(7): 391-407
[66]  毕利军, 周亚凤, 邓教宇, 张先恩, 张成刚. DNA 错配修复系统研究进展[J]. 生物化学与生物物理进展, 2003, 30(1): 32-37
[67]  Grilley M, Welsh K M, Su S S, Modrich P. Isolation and characterization of the Escherichia coli MutL gene product [J]. Journal of Biological Chemistry, 1989, 264(2): 1000-1004
[68]  Lee J Y, Chang J, Joseph N, Ghirlando R, Rao D N, Yang W. MutH complexed with hemi-and unmethylated DNAs: coupling base recognition and DNA cleavage [J]. Molecular Cell, 2005, 20(1): 155-166
[69]  Kunkel T, Erie D. DNA mismatch repair [J]. Annual Review of Biochemistry,2005, 74:681-710
[70]  Pavlov Y I, Mian I M, Kunkel T A. Evidence for preferential mismatch repair of lagging strand DNA replication errors in yeast [J]. Current Biology, 2003, 13(9): 744-748
[71]  Lahue R, Au K, Modrich P. DNA mismatch correction in a defined system [J]. Science, 1989, 245 (4914): 160-164
[72]  Burdett V, Baitinger C, Viswanathan M, Lovett S, Modrich P. In vivo requirement for RecJ, ExoVII, ExoI, and ExoX in methyl-directed mismatch repair [J]. Proceedings of the National Academy of Sciences of the United States of America, 2001, 98(12): 6765-6770
[73]  Viswanathan M, Burdett V, Baitinger C, Modrich P, Lovett S. Redundant exonuclease involvement in Escherichia coli methyl-directed mismatch repair [J]. Journal of Biological Chemistry, 2001, 276(33): 31053-31058

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