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核农学报  2015 

基于连锁不平衡水稻源库相关性状的关联分析

DOI: 10.11869/j.issn.100-8551.2015.04.0674, PP. 674-684

Keywords: 水稻,SNP标记,连锁不平衡,关联分析

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Abstract:

为挖掘水稻源库相关性状优异等位基因,利用分布于12条染色体的6704个SNP标记与来自31个国家和地区的261份籼稻核心种质资源的剑叶长、剑叶宽、剑叶叶面积、倒2叶长、倒2叶宽、倒2叶叶面积、每穗粒数、千粒重、单株产量共9个源库相关性状进行群体结构、连锁不平衡状况和全基因组关联分析.结果表明,261份籼稻核心种质资源的9个源库相关性状的变异系数介于12.46%~26.21%,表型变异丰富.群体结构显示261份籼稻核心种质资源的最适亚群数为3.LD分析表明,SNP位点之间存在着一定程度的连锁不平衡,在显著水平-logP>3(P<10-3)下,共检测到68个与9个水稻源库相关性状显著相关的QTL位点,其中与源性状相关的QTL位点55个,与库性状相关的QTL位点13个.在第2、第5和第11染色体上检测到同时影响源库性状的关联位点4个,可能对通过分子标记辅助育种改良品种的源库性状具有重要参考价值.

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