全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...
核农学报  2014 

杨树中I类Clp基因家族的表达分析

DOI: 10.11869/j.issn.100-8551.2014.05.0777, PP. 777-783

Keywords: 杨树,Clp,基因家族,基因表达

Full-Text   Cite this paper   Add to My Lib

Abstract:

Clp蛋白属于AAA+类ATP酶超级家族,广泛参与各种生物学过程。本研究在基因组水平上对杨树I类Clp基因家族的成员,从系统进化、基因结构及表达特性方面进行分析。杨树中共有9个I类Clp基因,各成员在不同组织、发育阶段及各种胁迫条件下的表达特性不同,说明它们参与不同的生物学过程。研究结果为进一步研究杨树I类Clp基因功能奠定了基础。

References

[1]  Hong S W, Vierling E. Hsp101 is necessary for heat tolerance but dispensable for development and germination in the absence of stress [J]. The Plant Journal, 2001,27(1):25-35
[2]  Nieto-Sotelo J, Martínez L M, Ponce G, Cassab G I, Alagón A, Meeley R B, Ribaut J-M, Yang R. Maize HSP101 plays important roles in both induced and basal thermotolerance and primary root growth [J]. The Plant Cell, 2002,14(7):1621-1633
[3]  Queitsch C, Hong S-W, Vierling E, Lindquist S. Heat shock protein 101 plays a crucial role in thermotolerance in Arabidopsis [J]. Science Signaling, 2000,12(4):479
[4]  Keeler S J, Boettger C M, Haynes J G, Kuches K A, Johnson M M, Thureen D L, Keeler C L, Kitto S L. Acquired thermotolerance and expression of the HSP100/ClpB genes of lima bean [J]. Plant Physiology, 2000,123(3):1121-1132
[5]  Yang J Y, Sun Y, Sun A Q, Yi S Y, Qin J, Li M H, Liu J. The involvement of chloroplast HSP100/ClpB in the acquired thermotolerance in tomato [J]. Plant Molecular Biology, 2006,62(3):385-395
[6]  Nakabayashi K, Ito M, Kiyosue T, Shinozaki K, Watanabe A. Identification of clp genes expressed in senescing Arabidopsis leaves [J]. Plant and Cell Physiology, 1999,40(5):504-514
[7]  Shanklin J, DeWitt N D, Flanagan J M. The stroma of higher plant plastids contain ClpP and ClpC, functional homologs of Escherichia coli ClpP and ClpA: an archetypal two-component ATP-dependent protease [J]. The Plant Cell, 1995,7(10):1713-1722
[8]  Zheng B, Halperin T, Hruskova-Heidingsfeldova O, Adam Z, Clarke A K. Characterization of chloroplast Clp proteins in Arabidopsis: localization, tissue specificity and stress responses [J]. Physiologia Plantarum, 2002,114(1):92-101
[9]  Kirstein J, Schlothauer T, Dougan D A, Lilie H, Tischendorf G, Mogk A, Bernd B, Turgay K. Adaptor protein controlled oligomerization activates the AAA+; protein ClpC [J]. The EMBO Journal, 2006,25(7):1481-1491
[10]  Sokolenko A, Lerbs-Mache S, Altschmied L, Herrmann R G. Clp protease complexes and their diversity in chloroplasts [J]. Planta, 1998,207(2):286-295
[11]  Halperin T, Zheng B, Itzhaki H, Clarke A K, Adam Z. Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease [J]. Plant Molecular Biology, 2001,45(4):461-468
[12]  Sj?gren L L, MacDonald T M, Sutinen S, Clarke A K. Inactivation of the clpC1 gene encoding a chloroplast Hsp100 molecular chaperone causes growth retardation, leaf chlorosis, lower photosynthetic activity, and a specific reduction in photosystem content [J]. Plant Physiology, 2004,136(4):4114-4126
[13]  Gottesman S. Proteases and their targets in Escherichia coli [J]. Annual Review of Genetics, 1996,30(1):465-506
[14]  Hwang B J, Park W J, Chung C H, Goldberg A L. Escherichia coli contains a soluble ATP-dependent protease (Ti) distinct from protease La [J]. Proceedings of the National Academy of Sciences, 1987,84(16):5550-5554
[15]  Katayama-Fujimura Y, Gottesman S, Maurizi M. A multiple-component, ATP-dependent protease from Escherichia coli [J]. Journal of Biological Chemistry, 1987,262(10):4477-4485
[16]  Laskowska E, Kuczyńska-Wi ? nik D, Skórko-Glonek J, Taylor A. Degradation by proteases Lon, Clp and HtrA, of Escherichia coli proteins aggregated in vivo by heat shock; HtrA protease action in vivo and in vitro [J]. Molecular Microbiology, 1996,22(3):555-571
[17]  Frickey T, Lupas A N. Phylogenetic analysis of AAA proteins [J]. Journal of Structural Biology, 2004,146(1):2-10
[18]  Neuwald A F, Aravind L, Spouge J L, Koonin E V. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes [J]. Genome Research, 1999,9(1):27-43
[19]  Schirmer E C, Glover J R, Singer M A, Lindquist S. HSP100/Clp proteins: a common mechanism explains diverse functions [J]. Trends in Biochemical Sciences, 1996,21(8):289-296
[20]  Adam Z, Adamska I, Nakabayashi K, Ostersetzer O, Haussuhl K, Manuell A, Zheng B, Vallon O, Rodermel S R, Shinozaki K. Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature [J]. Plant Physiology, 2001,125(4):1912-1918
[21]  Celerin M, Gilpin A A, Schisler N J, Ivanov A G, Miskiewicz E, Krol M, Laudenbach D E. ClpB in a cyanobacterium: predicted structure, phylogenetic relationships, and regulation by light and temperature [J]. Journal of Bacteriology, 1998,180(19):5173-5182
[22]  Batra G, Chauhan V S, Singh A, Sarkar N K, Grover A. Complexity of rice Hsp100 gene family: lessons from rice genome sequence data [J]. Journal of Biosciences, 2007,32(3):611-619
[23]  Lee U, Rioflorido I, Hong S W, Larkindale J, Waters E R, Vierling E. The Arabidopsis ClpB/Hsp100 family of proteins: chaperones for stress and chloroplast development [J]. The Plant Journal, 2007,49(1):115-127
[24]  Hong S-W, Vierling E. Mutants of Arabidopsis thaliana defective in the acquisition of tolerance to high temperature stress [J]. Proceedings of the National Academy of Sciences, 2000,97(8):4392-4397
[25]  Nakashima K, Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K. A nuclear gene, erd1, encoding a chloroplast-targeted Clp protease regulatory subunit homolog is not only induced by water stress but also developmentally up-regulated during senescence in Arabidopsis thaliana [J]. The Plant Journal, 1997,12(4):851-861
[26]  Lohman K N, Gan S, John M C, Amasino R M. Molecular analysis of natural leaf senescence in Arabidopsis thaliana [J]. Physiologia Plantarum, 1994,92(2):322-328
[27]  Du J, Xie H L, Zhang D Q, He X Q, Wang M J, Li Y Z, Cui K M, Lu M Z. Regeneration of the secondary vascular system in poplar as a novel system to investigate gene expression by a proteomic approach [J]. Proteomics, 2006, 6:881-895
[28]  Thompson J D, Gibson T J, Plewniak F, Jeanmougin F, Higgins D G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools [J]. Nucleic Acids Research, 1997,25(24):4876-4882
[29]  Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods [J]. Molecular Biology and Evolution, 2011,28(10):2731-2739
[30]  Guo A Y, Zhu Q H, Chen X, Luo J C. GSDS: a gene structure display server [J]. Yi Chuan, 2007,29(8):1023
[31]  Barrett T, Edgar R. Gene Expression Omnibus (GEO): Microarray data storage, submission, retrieval, and analysis [J]. Methods in Enzymology, 2006,411:352
[32]  Singh A, Singh U, Mittal D, Grover A.. Genome-wide analysis of rice ClpB/HSP100, ClpC and ClpD genes [J]. BMC Genomics, 2010,11(1):95

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133