Harper D A T. 2006. The Ordovician biodiversification: Setting an agenda for marine life. Paleogeogr Paleoclimatol Paleoecol, 232: 148-166
[2]
Hazen R M, Ferry J M. 2010. Mineral evolution: Mineralogy in the fourth dimension. Elements, 6: 9-12
[3]
Hoffman P F, Kaufman A J, Halverson G P, et al. 1998. A Neoproterozoic snowball Earth. Science, 281: 1342-1346
[4]
Hou X, Aldridge R J, Bergstr?m J, et al. 2004. The Cambrian Fossils of Chengjiang, China: The Flowering of Early Animal Life. Oxford: Blackwell Publishing. 1-233
[5]
Hua H, Chen Z, Yuan X, et al. 2005. Skeletogenesis and asexual reproduction in the earliest biomineralizing animal Cloudina. Geology, 33: 277-280
[6]
Isozaki Y. 1997. Permo-Triassic superanoxia and stratified superocean: Records from lost deep sea. Science, 276: 235-238
[7]
Jenkyns H C. 2003. Evidence for rapid climate change in the Mesozoic-Palaeogene greenhouse world. Philos Trans R Soc A-Math Phys Eng Sci, 361: 1885-1916
[8]
Jia C, Huang J, Kershaw S, et al. 2012. Microbial response to limited nutrients in shallow water immediately after the End-Permian mass extinction. Geobiology, 10: 60-71
[9]
Konhauser K O, Pecoits E, Lalonde S V, et al. 2009. Oceanic nickel depletion and a methanogen famine before the Great Oxidation Event. Nature, 458: 750-753
[10]
Kuypers M M M, van Breugel Y, Schouten S, et al. 2004. N2-fixing cyanobacteria supplied nutrient N for Cretaceous oceanic anoxic events. Geology, 32: 853-856
[11]
Lever M A, Rouxel O, Alt J C, et al. 2013. Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt. Science, 339: 1305-1308
[12]
Li C, Love G D, Lyons J R, et al. 2010. A stratified redox model for the Ediacaran Ocean. Science, 328: 80-83
[13]
Li Y, Konhauser K O, Cole D R, et al. 2011. Mineral ecophysiological data provide growing evidence for microbial activity in banded-iron formations. Geology, 29: 707-710
[14]
Li Y, Sun S, Chan L S. 2013. Phosphogenesis in the 2460 and 2728 milion-year-old banded iron formations as evidence for biological cycling of phosphate in the early biosphere. Ecol Evol, 3: 115-125
[15]
Liu D, Dong H, Bishop M E, et al. 2011. Reduction of structural Fe(III)in nontronite by methanogen Methanosarcina barkeri. Geochim Cosmochim Acta, 75: 1057-1071
[16]
Lu A, Li Y, Jin S, et al. 2012. Growth of non-phototrophic microorganisms using solar energy through mineral photocatalysis. Nat Commun, 3: 768
[17]
Luo G, Kump L R, Wang Y, et al. 2010. Isotopic evidence for an anomalously low oceanic sulphate concentration following End-Permian mass extinction. Earth Planet Sci Lett, 300: 101-111
[18]
Luo G, Wang Y, Algeo T J, et al. 2011. Enhanced nitrogen fixation in the immediate aftermath of the latest Permian marine mass extinction. Geology, 39, 647-650
[19]
Luo Z, Ji Q, Wible J R, et al. 2003. An Early Cretaceous tribosphenic mammal and metatherian evolution. Science, 302: 1934-1940
[20]
Macdonald F A, Schmitz M D, Crowley J L, et al. 2010. Calibrating the Cryogenian. Science, 327: 1241-1243
[21]
Margesin R, Miteva V. 2011. Diversity and ecology of psychrophilic microorganisms. Res Microbiol, 162: 346-361
[22]
Martin W, Baross J, Kelly D, et al. 2008. Hydrothermal vents and the origin of life. Nat Rev Microbiol, 6: 805-814
[23]
Marynowski L, Filipiak P. 2007. Water column euxinia and wildfire evidence during deposition of the Upper Famennian Hangenberg event horizon from the Holy Cross Mountains (central Poland). Geol Mag, 144: 569-595
[24]
Mehta M P, Baross J A. 2006. Nitrogen fixation at 92°C by a hydrothermal vent archaeon. Science, 314: 1783-1786
[25]
Meyer-Dombard D R, Shock E L, Amend J. 2005. Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA. Geobiology, 3: 211-227
[26]
Mikucki J A, Pearson A, Johnston D T, et al. 2009. A contemporary microbially maintained subglacial ferrous “Ocean”, Science, 324: 397-400
[27]
Miller R F, Cloutier R, Turner S. 2003. The oldest articulated chondrichthyan from the Early Devonian period. Nature, 425: 501-504
[28]
Miteva V, Teacher C, Sowers T, et al. 2009. Comparison of the microbial diversity at different depths of the GISP2 Greenland ice core in relationship to deposition climates. Environmen Microbiol, 11: 640-656
[29]
Murray A E, Kenig F, Fritsen C H, et al. 2012. Microbial life at -13°C in the brine of an ice-sealed Antarctic lake. Proc Natl Acad Sci USA, 109: 20626-20631
[30]
Olson J M. 2006. Photosynthesis in the Archean Era. Photosynth Res, 88: 109-117
[31]
Orphan V J, Hinrichs K U, Ussler W, et al. 2001. Comparative analysis of methane-oxidizing Archaea and sulfate-reducing bacteria in anoxic marine sediments. Appl Environ Microbiol, 67: 1922-1934
[32]
Papineau D, de Gregorio B T, Cody G D, et al. 2011. Young poorly crystalline graphite in the >3.8-Gyr-old Nuvvuagittuq banded iron formation. Nat Geosci, 4: 376-379
[33]
Payne J L, Lehrmann D J, Wei J, et al. 2004. Large perturbations of the carbon cycle during recovery from the End-Permian extinction. Science, 305: 506-509
[34]
Pearson A, Ingalls A E. 2013. Assessing the use of archaeal lipids as marine environmental proxies. Annu Rev Earth Planet Sci, 41: 359-384
[35]
Posth N R, Hegler F, Konhauser K O, et al. 2008. Alternating Si and Fe deposition caused by temperature fluctuations in Precambrian oceans. Nat Geosci, 1: 703-708
[36]
Pronk M, Goldscheider N, Zopfi J . 2009. Microbial communities in karst groundwater and their potential use for biomonitoring. Hydrogeol J, 17: 37-48
[37]
Raghoebarsing A A, Pol A, van de Pas-Schoonen K T, et al. 2006. A microbial consortium couples anaerobic methane oxidation to denitrification. Nature, 440: 918-921
[38]
Rampino M R, Prokoph A, Adler A. 2000. Tempo of the end-Permian event: High-resolution cyclostratigraphy at the Permian-Triassic boundary. Geology, 28: 643-646
[39]
Rasmussen B, Fletcher I R, Brocks J J, et al. 2008. Reassessing the first appearance of eukaryotes and cyanobacteria. Nature, 455: 1101-1104
[40]
Reichow M K, Pringle M S, Al''Mukhamedov A I, et al. 2009. The timing and extent of the eruption of the Siberian Traps large igneous province: Implications for the end-Permian environmental crisis. Earth Planet Sci Lett, 277: 9-20
[41]
Reigstad L J, Richter A, Daims H, et al. 2008. Nitrification in terrestrial hot springs of Iceland and Kamchatka. Fems Microbiol Ecol, 64: 167-174
[42]
Reiter J, Thiel V. 2011. Encyclopedia of Geobiology. Berlin: Springer. 1-927
[43]
Yin H, Xie S, Luo G, et al. 2012. Two episodes of environmental change at the Permian-Triassic boundary of the GSSP section Meishan. Earth-Sci Rev, 115: 163-172
[44]
Yin L, Zhu M, Knoll A H, et al. 2007. Doushantuo embryos preserved inside diapause egg cysts. Nature, 446: 661-663
[45]
Yuan X, Xiao S, Taylor T N. 2005. Lichen-like symbiosis 600 million years ago. Science, 308: 1017-1020
[46]
Zehr J P, Kudela R M. 2011. Nitrogen cycle of the open ocean: From genes to ecosystems. Annu Rev Mar Sci, 3: 197-225
[47]
Zhang C L, Pancost R D, Qian Y, et al. 2003. Archaeal lipid biomarkers and isotopic evidence of anaerobic methane oxidation associated with gas hydrates in the Gulf of Mexico. Org Geochem, 34: 827-834
[48]
Zhou Z. 2004. The origin and early evolution of birds: Discoveries, disputes, and perspectives from fossil evidence. Naturwissenschaften, 91: 455-471
[49]
Zhu M, Strauss H, Shields G A. 2007. From snowball earth to the Cambrian bioradiation: Calibration of Ediacaran-Cambrian earth history in South China. Paleogeogr Paleoclimatol Paleoecol, 254: 1-6
[50]
Zhu M, Zhao W, Jia L, et al. 2009. The oldest articulated osteichthyan reveals mosaic gnathostome characters. Nature, 458: 469-474
Agogué H, Brink M, Dinasquet J, et al. 2008. Major gradients in putatively nitrifying and non-nitrifying archaea in the deep North Atlantic. Nature, 456: 788-791
[95]
Anesio A M, Hodson A J, Fritz A, et al. 2009. High microbial activity on glaciers: Importance to the global carbon cycle. Glob Change Biol, 15: 955-960
[96]
Armstrong H A, Abbott G D, Turner B R, et al. 2009. Black shale deposition in an Upper Ordovician-Silurian permanently stratified, peri-glacial basin, southern Jordan. Paleogeogr Paleoclimatol Paleoecol, 273: 368-377
[97]
Bakermans C. 2008. Limits for microbial life at subzero temperatures. In: Margesin R, Schinner F, Marx J C, et al, eds. Psychrophiles: From Biodiversity to Biotechnology. Berlin: Springer Verlag. 17-28
[98]
Barton H A, Northup D E. 2007. Geomicrobiology in cave environments: Past, current and future perspectives. J Cave Karst Stud, 69: 163-178
[99]
Basu A, Petaev M I, Poreda R J, et al. 2003. Chondritic meteorite fragments associated with the Permian-Triassic boundary in Antarctica. Science, 302: 1388-1392
[100]
Becker L, Poreda R J, Basu A R, et al. 2004. Bedout: A possible End-Permian impact crater offshore of Northwestern Australia. Science, 304: 1469-1476
[101]
Brasier M D, Green O R, Jephcoat A P, et al. 2002. Questioning the evidence for Earth''s oldest fossils. Nature, 416: 76-81
[102]
Ca?averas J C, Cuezva S, Sanchez-Moral S, et al. 2006. On the origin of fiber calcite crystals in moonmilk deposits. Naturwissenschaften, 93: 27-32
[103]
Canfield D E. 1998. A new model for Proterozoic ocean chemistry. Nature, 396: 450-453
[104]
Cao C, Love G D, Hays L E, et al. 2009. Biogeochemical evidence for euxinic oceans and ecological disturbance presaging the End-Permian mass extinction event. Earth Planet Sci Lett, 281: 188-201
[105]
Chen Y, Wu L, Boden R, et al. 2009. Life without light: Microbial diversity and evidence of sulfur-and ammonium-based chemolithotrophy in Movile Cave. ISME J, 3: 1093-1104
[106]
Chen Z, Benton M J. 2012. The timing pattern of biotic recovery following the End-Permian mass extinction. Nat Geosci, 5: 375-383
[107]
Chro?áková A, Horák A, Elhottová D, et al. 2009. Diverse archaeal community of a bat guano pile in Domica cave (Slovak Karst, Slovakia). Folia Microbiol, 54: 436-446
[108]
Collin P, Kershaw S, Crasquin-Soleau S, et al. 2009. Facies changes and diagenetic processes across the Permian-Triassic boundary event horizon, Great Bank of Guizhou, South China: A controversy of erosion and dissolution. Sedimentology, 56: 677-693
[109]
Crowley T J, Berner R A. 2001. CO2 and climate change. Science, 292: 870-872
[110]
Daeschler E, Shubin N H, Jenkins Jr F A. 2006. A Devonian tetrapod-like fish and the evolution of the tetrapod body plan. Nature, 440: 757-763
[111]
Danielopol D L, Pospisil P, Rouch R. 2000. Biodiversity in groundwater: A large scale view. Trends Ecol Evol, 15: 223-224
[112]
de la Torre J R, Walker C B, Ingalls A E, et al. 2008. Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol, 10: 810-818
[113]
Dong H. 2010. Mineral-microbe interactions: A review. Front Earth Sci China, 4: 127-147
[114]
Edwards K J, Wheat C G, Sylvan J B. 2011. Under the sea: Microbial life in volcanic oceanic crust. Nat Rev Microbiol, 9: 703-712
[115]
Ekstrom S, Noziere B, Hultberg M, et al. 2010. A possible role of ground-based microorganisms on cloud formation in the atmosphere. Biogeosciences, 7: 387-394
[116]
Engel A S. 2010. Microbial diversity of cave ecosystems. In: Barton L L, Mandl M, Loy A, eds. Geomicrobiology: Molecular and Environmental Perspective. Dordrecht:Springer. 219-238
[117]
Fisk M R, Giovannoni S J, Thorseth I H. 1998. Alteration of oceanic volcanic glass: Textural evidence of microbial activity. Science, 281: 978-979
[118]
Gill B C, Lyons T W, Young S A, et al. 2011. Geochemical evidence for widespread euxinia in the Later Cambrian ocean. Nature, 469: 80-83
[119]
Glud R, Wenzh?fer F, Middelboe M, et al. 2013. High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth. Nat Geosci, 6: 284-288
[120]
Gowik U, Westhoff P. 2011. The path from C3 to C4 Photosynthesis. Plant Physiol, 155: 56-63
[121]
Grice K, Cao C, Love G D, et al. 2005. Photic zone euxinia during the Permian-Triassic superanoxic event. Science, 307: 706-709
[122]
Griebler C, Lueders T. 2009. Microbial biodiversity in groundwater ecosystem. Freshw Biol, 54: 649-677
[123]
Grzebyk D, Schofield O, Vetriani C, et al. 2003. The Mesozoic radiation of Eukaryotic algae: The portable plastid hypothesis. J Phycol, 39: 259-267
[124]
Jiang G Q, Kennedy M J, Christie-Blick N. 2003. Stable isotopic evidence for methane seeps in Neoproterozoic postglacial cap carbonates. Nature, 426: 822-826
[125]
Jiang H, Huang Q, Dong H, et al. 2010. RNA-based investigation of ammonia-oxidizing archaea in hot springs of Yunnan Province, China. Appl Environ Microbiol, 76: 4538-4541
[126]
Jiao N Z, Herndl G J, Hansell D A, et al. 2010. Microbial production of recalcitrant dissolved organic matter: Long-term carbon storage in the global ocean. Nat Rev Microbiol, 8: 593-599
[127]
Jin Y G, Wang Y, Wang W, et al. 2000. Pattern of marine mass extinction near the Permian-Triassic boundary in South China. Science, 289: 432-436
[128]
Johnson S S, Hebsgaard M B, Christensen T R, et al. 2007. Ancient bacteria show evidence of DNA repair. Proc Natl Acad Sci USA, 104: 14401-14405
[129]
Johnson C M, Beard B L, Klein C, et al. 2008. Iron isotopes constrain biologic and abiologic processes in banded iron formation genesis. Geochim Cosmochim Acta, 72: 151-169
[130]
Kalyuzhnaya M G, Lapidus A, Ivanova N, et al. 2008. High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol, 26: 1029-1034
[131]
Klein C. 2005. Some Precambrian banded iron-formations(BIFs)from around the world: Their age, geological setting, mineralogy, metamorphism, geochemistry, and origin. Am Mineral, 90: 1473-1499
[132]
Knoll A H, Bambach R K, Payne J L, et al. 2007. Paleophysiology and end-Permian mass extinction. Earth Planet Sci Lett, 256: 295-313
[133]
Knoll A H, Canfield D E, Konhauser K O. 2012. Fundamentals of Geobiology. Chichester: Wiley-Blackwell. 1-443
[134]
Konhauser K O, Amskold L, Lalonde S V, et al. 2007. Decoupling photochemical Fe(II)oxidation from shallow-water BIF deposition. Earth Planet Sci Lett, 258: 87-100
[135]
Renne P R, Black M T, Zhang Z C, et al. 1995. Synchrony and causal relations between Permian-Triassic boundary crises and Siberian Flood volcanism. Science, 269: 1413-1416
[136]
Rinke C, Schwientek P, Sczyrba A, et al. 2013. Insights into the phylogeny and coding potential of microbial dark matter. Nature, 499: 431-437
[137]
Rogers D R, Casciotti K L. 2010. Abundance and diversity of archaeal ammonia oxidizers in a coastal groundwater system. Appl Environmen Microbiol, 76: 7938-7948
[138]
Rothschild L J, Mancinelli R L. 2001. Life in extreme environments. Nature, 409: 1092-1101
[139]
Schleper C, Jurgens G, Jonuscheit M. 2005. Genomic studies of uncultivated archaea. Nat Rev Microbiol, 3: 479
[140]
Schouten S, Hopmans E C, Sinninghe Damsté J S. 2013. The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review. Org Geochem, 54: 19-61
[141]
Shen S, Crowley J L, Wang Y, et al. 2011. Calibrating the End-Permian mass extinction. Science, 334: 1367-1372
[142]
Shen Y, Farquhar J, Zhang H, et al. 2011. Multiple S-isotopic evidence for episodic shoaling of anoxic water during Late Permian mass extinction. Nat Commun, 2: 210
[143]
Shu D, Luo H, Morris S C, et al. 1999. Lower Cambrian vertebrates from South China. Nature, 402: 42-46
[144]
Song H, Wignall P, Chen Z, et al. 2011. Recovery tempo and pattern of marine ecosystems after the end-Permian mass extinction. Geology, 39: 739-742
[145]
Song H, Wignall P B, Tong J, et al. 2012. Two pulses of extinction during the Permian-Triassic crisis. Nature Geosci, 6: 52-56
[146]
Steemans P, Herisse A L, Melvin J, et al. 2009. Origin and radiation of the earliest vascular land plant. Science, 324: 353
[147]
Stein W E, Mannolini F, VanAller Hernick L, et al. 2007. Giant cladoxylopsid trees resolve the enigma of the Earth''s earliest forest stumps at Gilboa. Nature, 446: 904-907
[148]
Strom S L. 2008. Microbial ecology of ocean biogeochemistry: A community perspective. Science, 320: 1043-1045
[149]
Sun Y, Joachimski M M, Wignall P B, et al. 2012. Lethally hot temperatures during the Early Triassic greenhouse. Science 338: 366-370
[150]
Tong J, Zhang S, Zuo J, et al. 2007. Events during Early Triassic recovery from the End-Permian extinction. Glob Planet Change, 55: 66-80
[151]
van Bentum E C, Hetzel A, Brumsack H J, et al. 2009. Reconstruction of water column anoxia in the equatorial Atlantic during the Cenomanian-Turonian oceanic anoxic event using biomarker and trace metal proxies. Paleogeogr Paleoclimatol Paleoecol, 280: 489-498
[152]
Vaughan M J, Maier R M, Pryor B M. 2011. Fungal communities on speleothem surfaces in Kartchner cavern, Arizona, USA. Int J Speleology, 40: 65-77
[153]
Wang F, Lu S, Orcutt B, et al. 2013. Discovering the roles of subsurface microorganisms: Progress and future of deep biosphere investigation. Chin Sci Bull, 58: 456-467
[154]
Wang J S, Jiang G Q, Xiao S H, et al. 2008. Carbon isotope evidence for widespread methane seeps in the ca. 635 Ma Doushantuo cap carbonate in south China. Geology, 36: 347-350
[155]
Webby B D, Paris F, Droser M L, et al. 2004. The Great Ordovician Biodiversification Event. New York: Columbia University Press. 1-484
[156]
Weber K A, Achenbach L A, Coates J D. 2006. Microorganisms pumping iron: Anaerobic microbial iron oxidation and reduction. Nat Rev Microbiol, 4: 752-764
[157]
Wignall P B, Twitchett R J. 1996. Oceanic anoxia and the End Permian mass extinction. Science, 272: 1155-1158
[158]
Xie S, Lai X, Yi Y, et al. 2003. Molecular fossils in a Pleistocene river terrace in southern China related to paleoclimate variation. Org Geochem, 34: 789-797
[159]
Xie S, Pancost R D, Yin H, et al. 2005. Two episodes of microbial change coupled with Permo/Triassic faunal mass extinction. Nature, 434: 494-497
[160]
Xie S, Pancost R D, Huang J, et al. 2007. Changes in the global carbon cycle occurred as two episodes during the Permian-Triassic crisis. Geology, 35: 1083-1086
[161]
Xie S, Pancost R D, Wang Y, et al. 2010. Cyanobacterial blooms tied to volcanism during the 5 m.y. Permo-Triassic biotic crisis. Geology, 38: 447-450
[162]
Xie S, Pancost R D, Chen L, et al. 2012. Microbial lipid records of highly alkaline deposits and enhanced aridity associated with significant uplift of Tibetan Plateau in late Miocene. Geology, 40: 291-294
[163]
Xie S, Evershed R P, Huang X, et al. 2013. Concordant monsoon-driven postglacial hydrological changes in peat and stalagmite records and their impacts on prehistoric cultures in central China. Geology, 41: 827-830
[164]
Xie W, Wang F, Guo L, et al. 2011. Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J, 5: 414-426
[165]
Xu X, Zhou Z, Wang X, et al. 2003. Four-winged dinosaurs from China. Nature, 421: 335-340
[166]
Yao T D, Liu Y Q, Kang S C, et al. 2008. Bacteria variabilities in a Tibetan ice core and their relations with climate change. Glob Biogeochem Cycle, 22: 1-11
[167]
Yin H, Feng Q, Lai X, et al. 2007. The protracted Permo-Triassic crisis and the multi-episode mass extinction around the Permian-Triassic boundary. Glob Planet Change, 55: 1-20