2 Grabowski P J, Black D L. Alternative RNA splicing in the nervous system. Prog Neurobiol, 2001, 65: 289-308??
[2]
3 Douglas L, Black. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem, 2003, 72: 291-336??
[3]
4 Wang G S, Cooper T A. Splicing in disease: Disruption of the splicing code and the decoding machinery. Nat Rev Genet, 2007, 8: 749-761??
[4]
5 Cooper T A, Wan L L, Dreyfuss G. RNA and disease. Cell, 2009, 136: 777-793??
[5]
6 Johnson J M, Castle J, Garrett-Engele P, et al. Genome-wide survey of human alternative pre-mRNA splicing with exon junctionmicroarrays. Science, 2003, 302: 2141-2144??
[6]
7 Clark T A, Schweitzer A C, Chen T X, et al. Discovery of tissue-specific exons using comprehensive human exon microarrays. GenomeBiol, 2007, 8: R64
[7]
8 Sonnenburg S, Schweikert G, Philips P, et al. Accurate splice site prediction using support vector machines. BMC Bioinformatics, 2007, 10:S7
[8]
9 Pertea M, Lin X Y, Salzberg S L. GeneSplicer: A new computational method for splice site detection. Nucleic Acids Res, 2001, 29:1185-1190??
[9]
10 Zhang Q W, Peng Q K, Li K K, et al. Splice sites detection by combining markov and hidden markov model. Biomed Eng Inform, 2009, 9:1-5
[10]
11 Reese M G. Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster. Comput Chem, 2001, 26:51-56??
[11]
12 Iida K, Fukami-Kobayashi K, Toyoda A, et al. Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana usingnovel sequenced full-length cDNAs. DNA Res, 2009, 16: 155-164??
[12]
13 Wang Z, Gerstein M, Snyder M. RNA-Seq: A revolutionary tool for transcriptomics. Nat Rev Genet, 2009, 10: 57-63??
[13]
14 Mortazavi A, Williams B A, McCue K, et al. Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat Methods, 2008, 5:621-628??
[14]
15 Sultan M, Schulz M H, Richard H, et al. A global view of gene activity and alternative splicing by deep sequencing of the humantranscriptome. Science, 2008, 321: 956-960??
[15]
16 Pan Q, Shai O, Lee L J, et al. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.Nat Genet, 2008, 40: 1413-1415??
[16]
17 Ramani A K, Calarco J A, Pan Q, et al. Genome-wide analysis of alternative splicing in Caenorhabditis elegans. Genome Res, 2011, 21:342-348??
[17]
18 Stolc V, Gauhar Z, Mason C, et al. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science, 2004, 306:655-660??
[18]
19 Black D L. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem, 2003, 72: 291-336??
[19]
20 Gan Q, Chepelev I, Wei G, et al. Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed byRNA-seq. Cell Res, 2010, 20: 763-783??
[20]
21 Graveley B R, Brooks A N, Carlson J W, et al. The developmental transcriptome of Drosophila melanogaster. Nature, 2011, 471: 473-479??
[21]
22 Yun D, Li Z, Shuang Y, et al. A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linkedmale fertility genes. PLoS Genet, 2010, 6: e1001255??
[22]
23 Pepke S, Wold B, Mortazavi A. Computation for ChIP-seq and RNA-seq studies. Nat Methods, 2009, 6: S22-S32??
[23]
24 Trapnell C, Pachter L, Salzberg S L. TopHat: Discovering splice junctions with RNA-seq. Bioinformatics, 2009, 25: 1105-1111??
[24]
25 Langmead B, Trapnell C, Pop M, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. GenomeBiol, 2009, 10: R25
[25]
26 Dorus S, Freeman Z N, Parker E R, et al. Recent origins of sperm genes in Drosophila. Mol Biol Evol, 2008, 25: 2157-2166??
[26]
27 Ghosh-Roy A, Desai B S, Ray K. Dynein light chain 1 regulates dynamin-mediated F-actin assembly during sperm individualization inDrosophila. Mol Biol Cell, 2005, 16: 3107-3116??
[27]
28 Kondylis V, Tang Y, Fuchs F, et al. Identification of ER proteins involved in the functional organisation of the early secretory pathway inDrosophila cells by a targeted RNAi screen. PLoS One, 2011, 6: e17173??