1 Johnson W E, Eizirik E, Pecon S J, et al. The late radiation of modern Felidae: a genetic assessment. Science, 2006, 311: 73–77??
[2]
2 Werdelin L. Small pleistocene felines of North America. J Vert Paleo, 1985, 5: 194–210??
[3]
3 Hunt R M J. Biogeography of the order Carnivora. In: Carnivore Behavior, Ecology, and Evolution. Vol 2. New York: Cornell University Press, 1996. 485–541
[4]
4 Werdelin L. Morphological patterns in the skulls of cats. Biol J Linnean Soc, 1983, 19: 375–391??
[5]
5 Radinsky L B. Evolution of skull shape. Representative modern carnivores. Biol J Linnean Soc, 1981, 15: 369–388??
[6]
6 Wurster-Hill D H, Centerwall W R. The interrelationships of chromosome banding patterns in Procyonids, Viverrids and Felids. Cytogenet Cell Genet, 1982, 34: 178–192??
[7]
7 Modi W S, O’Brien S J. Quantitative cladistic analysis of chromosomal banding data among species in three orders of mammals: hominoid primates, felids and arvicolid rodents. In: Chromosome Structure and Function: Impact of New Concepts. New York: Plenum Press, 1988. 215–242
[8]
8 Salles L O. Felid phylogenetics: extant taxa and skull morphology (Felidae, Aeluroidea). American Museum Novitates, 1992, 3047: 1–67
[9]
9 Collier G E, O’Brien S J. A molecular phylogeny of the Felidae: immunological distance. Evolution, 1985, 39: 437–487
[10]
10 O''Brien S J, Collier G E, Benveniste R E, et al. Setting the molecular clock in Felidae: the great cats Panthera. In: Tilson R L, Seal U S, eds. Tigers of the World: the Biology, Biopolitics, Management and Conservation of an Endangered Species. Park Ridge, NJ: Noyes Publications, 1987. 10–27
[11]
11 Pecon S J, Johnson W E, Goldman D, et al. Phylogenetic reconstruction of South American felids defined by protein electrophoresis. J Mol Evol, 1994, 39: 296–305??
[12]
12 Benveniste R E. The contributions of retroviruses to the study of mammalian evolution. In: Molecular Evolutionary Genetics. New York: Plenum Press, 1985. 359–417
[13]
13 Pecon S J, O’Brien S J. Patterns of Y and X chromosome DNA sequence divergence during the Felidae radiation. Genetics, 1998, 148: 1245–1255
[14]
14 Bininda-Emonds O R. The utility of chemical signals as phylogenetic characters: an example from the felidae. Biol J Linnean Soc, 2001, 72: 1–15??
[15]
15 Johnson W E, O’Brien S J. Phylogenetic reconstruction of the Felidae using 16SrRNA and NADH-5 mitochondrial genes. Mol Evol, 1997, 44: 98–116??
[16]
16 Saccone C, Lanave C, Pesole G, et al. Influence of base composition on quantitative estimates of gene evolution. Methods Enzymol, 1999, 183: 570–583
[17]
17 Wu X B, Zheng T, Jiang Z G, et al. The mitochondrial genome structure of the clouded leopard (Neofelis nebulosa). Genome, 2007, 50: 252–257??
[18]
18 Janczewski D N, Modi W S, Stephens J C, et al. Molecular evolution of mitochondrial 12S RNA and cytochrome b sequencse in the Pantherine lineage of Felidae. Mol Biol Evol, 1995, 12: 690–707
[19]
19 Lopez J V, Cevario S, O’Brien S J. Complete nucleotide sequences of the Domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Genomics, 1996, 33: 229–246??
[20]
20 Burger P A, Steinborn R, Walzer C, et al. Analysis of the mitochondrial genome of cheetahs (Acinonyx jubatus) with neurodegenerative disease. Gene, 2004, 338: 111–119??
[21]
21 Rychlik W, Rychlik P. Oligo Primer Analysis Software. Version 6.01. Molecular Biology Insights, Inc., Cascade, Colorado, 2000
[22]
22 Altschul S F, Madden T L, Sch?er A A, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res, 1997, 25: 3389–3402??
[23]
23 Thompson J D, Gibson T J, Plewniak F, et al. The clustal X windows interface: xexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res, 1997, 25: 4876–4882??
[24]
24 Swofford D L. PAUP*: Phylogenetic Analysis Using Parsimony(*and Other Methods), 2003
[25]
25 Huelsenbeck J P, Hillis D M. Success of phylogenetic methods in the four-taxon case. Syst Biol, 1993, 42: 247–264
[26]
26 Ronquist, Huelsenbeck J P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 2003, 19: 1572–1574??
[27]
27 Posada D, Buckley T R. Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests. Syst Biol, 2004, 53: 793–808??
[28]
28 Rannala B, Yang Z. Probability distribution of molecular evolution trees: a new method of phylogenetic inference. J Mol Evol, 1996, 43: 304–311??
[29]
29 Leaché A D, Reeder T W. Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Syst Biol, 2002, 51: 44–68??
[30]
30 Shimodaira H, Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol, 1999, 16: 1114–1116
[31]
31 Asakawa S, Kumazawa Y, Araki T, et al. Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes. J Mol Evol, 1991, 32: 511–520??
[32]
32 Arnason U, Gullberg A, Gretarsdottir S, et al. The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates. J Mol Evol, 2000, 50: 569–578
[33]
33 Hillis D M, Moritz C. An overview of applications of molecular systematics. In: Molecular Systematics. Sunderland: Sinauer Associates, 1990
[34]
34 Glazko G V, Nei M. Estimation of divergence times for major lineages of primate species. Mol Biol Evol, 2003, 20: 424–434??
[35]
35 Waddell P J, Cao Y, Hasegawa M, et al. Assessing the Cretaceous superordinal divergence times within birds and placental mammals by using whole mitochondrial protein sequences and an extended statistical framework. Syst Biol, 1999, 48: 119–137??
[36]
36 Nilsson A M, Gullberg A, Spencer P, et al. Marsupial relationships and a timeline for marsupial radiation in South Gondwana. Gene, 2004, 340: 189–196??
[37]
37 Yang Z, Yoder A D. Comparison of likelihood and Bayesian methods for estimating divergence time using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species. Syst Biol, 2003, 52: 705–716??
[38]
38 Huelsenbeck J P, Rannala B. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science, 1997, 276: 227–232??
[39]
39 Janke A, Arnason U. The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles). Mol Biol Evol, 1997, 14: 1266–1272
[40]
40 Kumar S, Tamura K, Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform, 2004, 5: 150–163??
[41]
41 Xu X, Gullberg A, Arnason U. The complete mitochondrial DNA (mtDNA) of the donkey and mtDNA comparisons among four closely related mammalian species-pairs. J Mol Evol, 1996, 43: 438–446??
[42]
42 Kim K S, Seong E L, Ho W J, et al. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Mol Phylogenet Evol, 1998, 10: 210–220??
[43]
43 Arnason U, Adegoke J A, Bodin K, et al. Mammalian mitogenomic relationships and the root of the eutherian tree. Proc Natl Acad Sci USA, 2002, 99: 8151–8156??
[44]
44 Xu X, Arnason U. The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region. Gene, 1994, 148: 357–362??
[45]
45 Xu X, Arnason U. The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis. Mol Phylogenet Evol, 1997, 7: 189–194??
[46]
46 Xu X, Janke A, Arnason U. The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the Phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea). Mol Biol Evol, 1996, 13: 1167–1173
[47]
47 Janke A, Feldmaier-Fuchs G, Thomas W K, et al. The marsupial mitochondrial genome and the evolution of placental mammals. Genetics, 1994, 137: 243–256
[48]
48 Desjardins P, Morais R. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J Mol Biol, 1990, 212: 599–634??
[49]
49 Johnson K P, Sorenson M D. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (Tribe: Anatini). Mol Phylogenet Evol, 1998, 10: 82–94??
[50]
50 H?rlid A, Janke A, árnason ú. The complete mitochondrial genome of Rhea americana and early avian divergences. J Mol Evol, 1998, 46: 669–679??
[51]
51 H?rlid A, Janke A, árnason ú. The mtDNA Sequence of the ostrich and the divergence between paleognathous and neognathous birds. J Mol Evol, 1997, 14: 754–761
[52]
52 Janke A, Arnason U. The complete mitochondrial genome of Alligator mississippiensis and the separation between recent Archo-sauria (birds and crocodiles). J Mol Biol Evol, 1997, 14: 1266–1272
54 Jae-Heup K, Eizirik E, O''Brien S J, et al. Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats. Mitochondrion, 2001, 3: 279–292
[55]
55 Gissi C, Gullberg A, Arnason U. The Complete mitochondrial DNA sequence of the Rabbit (Oryctolagus cuniculus). Genomics, 1998, 50: 161–169??
[56]
56 Sano N, Kurabayashi A, Fujii T, et al. Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the bell-ring frog, Buergeria buergeri (family Rhacophoridae). Genes Genet Syst, 2004, 79: 151–163??
[57]
57 Han D M, Zhou K Y. Complete sequence and gene organization of the mitochondrial genome of Tokay (Gekko gecko). Zool Res Apr, 2005, 26: 123–128
59 Frazer-Abel A A, Hagerman P J. Determination of the angle between the acceptor and anticodon stems of a truncated mitochondrial tRNA. J Mol Biol, 1999, 85: 581–593
[60]
60 Bininda-Emonds O R, Gittleman J L, Purvis A. Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia). Biol Rev, 1999, 74: 143–175??
[61]
62 Kurten B, Anderson E. Pleistocene mammals of North America. New York: Columbia University Pree, 1980
[62]
65 O''Brien S J, Johnson W E. The evolution of cats. Genomic paw prints in the DNA of the world''s wild cats have clarified the cat family tree and uncovered several remarkable migrations in their past. Sci Am, 2007, 297: 68–75
[63]
66 Davis B W, Li G, Murphy W J. Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae). Mol Phylogenet Evol, 2010, 56: 64–76??
[64]
67 Neff N A. The Big Cats: the Painting of Guy Coheleach. New York: Abrams, 1982
[65]
68 Hemmer H. The evolutionary systematics of living Felidae: present status and current problems. Carnivore, 1978, 1: 71–79
[66]
69 Pocock R I. Notes upon some African species of the genus Felis, based upon specimens recently exhibited in the society’s garden. Proc Zool Soc Lond, 1907: 656–667
[67]
70 Yu L, Zhang Y P. Phylogenetic studies of pantherine cats (Felidae) based on multiple genes, with novel application of nuclear β-fibrinogen intron 7 to carniores. Mol Phyl Evol, 2005, 35: 483–495
[68]
71 Pecon S J, Wilkerson A J P, Murphy W J, et al. Phylogenetic Assessment of Introns and SINES within the Y chromosome using the cat family Felidae as a species tree. Mol Biol Evol, 2004, 21: 2299–2309??
[69]
72 Mattern M Y, McLennan D A. Phylogeny and speciation of Felids. Cladistics, 2000, 16: 232–253??
[70]
73 Buckley-Beason V A, Johnson W E, Nash W G, et al. Molecular evidence for species-level distinctions in clouded leopards. Curr Biol, 2006, 16: 2371–2376??
[71]
74 Turner A. New fossil carnivore remains from the Sterkfontein hominid site (Mammalia: Carnivora). Ann Transvall Mus, 1987, 34: 319–347
[72]
75 Li J J, Fang X M, Pan B T. Late Cenozoic intensive uplift of Qinghai-Xijiang Plateau and its impacts on environments in surrounding area. Quaternary Sci (in Chinese), 2001, 21: 381–391
[73]
76 Kroon D, Steen T, Troelstra S R. Onset of monsoonal related upwelling in the western Arabian Sea as revealed by planktonic foraminifers. Proc Ocean Drill Program Sci Results, 1991, 117: 257–263
[74]
77 Harrison T M, Copeland P, Kidd W S F, et al. Activation of the Nyainqentanghla shear Zone: implications for uplift of the southern Tibetan Plateau. Tectonics, 1995, 14: 658–676??
79 An Z, Kutzbach J E, Prell W L, et al. Evolution of Asian monsoons and phased uplift of the Qinghai-Tibetan Plateau since late Miocene times. Nature, 2001, 411: 62–66??
[77]
80 Zheng H, Powell C M, An Z, et al. Pliocene uplift of the northern Tibet plateau. Geology, 2000, 28: 715–718??
[78]
61 Yu L, Li Q W, Ryder O A, et al. Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes. Mol Phylogenet Evol, 2004, 33: 694–705??
[79]
63 Wayne R K, Benveniste R E, Janczewski D N, et al. Molecular and biochemical evolution of the Carnivora. In: Carnivore Behaviour, Ecology and Evolution. London: Chapman and Hall, 1989. 465–494
[80]
64 King V, Goodfellow P N, Pearks W A J, et al. Evolution of the male-determining gene SRY within the cat family Felidae. Genetics, 2007, 175: 1855–1867??