1 Baker B, Zambryski P, Staskawicz B, et al. Signaling in plant-microbe interactions. Science, 1997, 276: 726-733
[2]
2 Jones J D, Dangl J L. The plant immune system. Nature, 2006, 444: 323-329
[3]
3 Boller T, Felix G. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annu Rev Plant Biol, 2009, 60: 379-406
[4]
4 Chen X, Ronald P C. Innate immunity in rice. Trends Plant Sci, 2011, 16: 451-459
[5]
5 Song W Y, Wang G L, Chen L L, et al. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science, 1995, 270: 1804-1806
[6]
6 Wang G L, Ruan D L, Song W Y, et al. Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines racespecific recognition and is subject to adaptive evolution. Plant Cell, 1998, 10: 765-779
[7]
7 Xu W H, Wang Y S, Liu G Z, et al. The autophosphorylated Ser686, Thr688, and Ser689 residues in the intracellular juxtamembrane domain of XA21 are implicated in stability control of rice receptor-like kinase. Plant J, 2006, 45: 740-751
[8]
8 Chen X, Chern M, Canlas P E, et al. The rice XB24 ATPase promotes autophosphorylation of XA21 and inhibits XA21-mediated immunity. Proc Natl Acad Sci USA, 2010, 107: 8029-8034
[9]
9 He Z, Wang Z, Li J, et al. Perception of brassinosteroids by the extracellular domain of the receptor kinase, BRI1.Science, 2000, 288: 2360-2363
[10]
10 Lee S W, Han S W, Bartley L E, et al. Unique characteristics of Xanthomonas oryzae pv. oryzae AvrXa21 and implications for plant innate immunity. Proc Natl Acad Sci USA, 2006, 103: 18395-18400
[11]
11 Lee S W, Han S W, Sririyanum M, et al. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science, 2009, 326: 850-853
[12]
12 Park C J, Han S W, Chen X, et al. Elucidation of XA21-mediated innate immunity. Cell Microbiol, 2010, 12: 1017-1025
[13]
13 Park C J, Bart R, Chern M, et al. Overexpression of the endoplasmic reticulum chaperone BiP3 regulates XA21-mediated innate immunity in rice. PLoS ONE, 2010, 5: e9262
[14]
14 Wang Y S, Pi L Y, Chen X, et al. Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance. Plant Cell, 2006, 18: 3635-3646
[15]
15 Seo Y S, Chern M, Bartley L E, et al. Towards establishment of a rice stress response interactome. PLoS Genet, 2011, 7: e1002020
[16]
16 Peng Y, Bartley L E, Chen X, et al. OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice. Mol Plant, 2008, 1: 446-458
[17]
17 Park C J, Peng Y, Chen X, et al. Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity. PLoS Biol, 2008, 6: e231
[18]
18 Park C J, Ronald P C. Cleavage and nuclear localization of the rice XA21 immune receptor. Nat Commun, 2012, 3: 920
[19]
19 Kaku H, Nishizawa Y, Ishii-Minami N, et al. Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proc Natl Acad Sci USA, 2006, 103: 11086-11091
[20]
20 Miya A, Albert P, Shinya T, et al. CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc Natl Acad Sci USA, 2007, 104: 19613-19618
[21]
21 Wan J, Zhang X C, Neece D, et al. A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis. Plant Cell, 2008, 20: 471-481
[22]
22 Shimizu T, Nakano T, Takamizawa D, et al. Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice. Plant J, 2010, 64: 204-214
[23]
23 Kishi-Kaboshi M, Okada K, Kurimoto L, et al. A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis. Plant J, 2010, 63: 599-612
[24]
24 Chen L, Hamada S, Fujiwara M, et al. The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity. Cell Host Microbe, 2010, 7: 185-196
[25]
25 Kishimoto K, Kouzai Y, Kaku H, et al. Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice. Plant J, 2010, 64: 343-354
[26]
26 Ronald P C, Beutler B. Plant and animal sensors of conserved microbial signatures. Science, 2010, 330: 1061-1064
[27]
27 Gomez-Gomez L, and Boller T. FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. Mol Cell, 2000, 5: 1003-1011
[28]
28 Che F S, Nakajima Y, Tanaka N, et al. Flagellin from an incompatible strain of Pseudomonas avenae induces a resistance response in cultured rice cells. J Biol Chem, 2000, 275: 32347-32356
[29]
29 Tanaka N, Che F S, Watanabe N, et al. Flagellin from an incompatible strain of Acidovorax avenae mediates H2O2 generation accompanying hypersensitive cell death and expression of PAL, Cht-1, and PBZ1, but not of Lox in rice. Mol Plant Microbe Interact, 2003, 16: 422-428
[30]
30 Takai R, Isogai A, Takayama S, et al. Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice. Mol Plant Microbe Interact, 2008, 21: 1635-1642
[31]
31 Zipfel C, Robatzek S, Navarro L, et al. Bacterial disease resistance in Arabidopsis through flagellin perception. Nature, 2004, 428: 764-767
[32]
32 Sun X, Cao Y, Yang Z, et al. Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J, 2004, 37: 517-527
[33]
33 Cao Y, Duan L, Li H, et al. Functional analysis of Xa3/Xa26 family members in rice resistance to Xanthomonas oryzae pv. oryzae. Theor Appl Genet, 2007, 115: 887-895
35 Yoshimura S, Yamanouchi U, Katayose Y, et al. Expression of Xa1, a bacterial blight resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA, 1998, 95: 1663-1668
[36]
36 Gu K, Yang B, Tian D, et al. R gene expression induced by a type-Ⅲ effector triggers disease resistance in rice. Nature, 2005, 435: 1122-1125
[37]
37 Iyer A S, McCouch S R. The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance. Mol Plant Microbe Interact, 2004, 17: 1348-1354
[38]
38 Jiang G H, Xia Z H, Zhou Y L, et al. Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFⅡAgamma1. Mol Genet Genomics, 2006, 275: 354-366
[39]
39 Yang B, Sugio A, White F F. Os8N3 is a host disease-susceptibility gene for bacterial blight of rice. Proc Natl Acad Sci USA, 2006, 103: 10503-10508
[40]
40 Antony G, Zhou J, Huang S, et al. Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3. Plant Cell, 2010, 22: 3864-3876
[41]
41 Chen L Q, Hou B H, Lalonde S, et al. Sugar transporters for intercellular exchange and nutrition of pathogens. Nature, 2010, 468: 527-532
[42]
42 Liu Q, Yuan M, Zhou Y, et al. A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice. Plant Cell Environ, 2011, 34: 1958-1969
[43]
43 Bryan G T, Wu K S, Farrall L, et al. A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell, 2000, 12: 2033-2046
[44]
44 Jia Y, McAdams S A, Bryan G T, et al. Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO J, 2000, 19: 4004-4014
[45]
45 Wang Z X, Yano M, Yamanouchi U, et al. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J, 1999, 19: 55-64
[46]
46 Zhou B, Qu S, Liu G, et al. The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea. Mol Plant Microbe Interact, 2006, 19: 1216-1228
[47]
47 Ashikawa I, Hayashi N, Yamane H, et al. Two adjacent nucleotide-binding site leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance. Genetics, 2008, 180: 2267-2276
[48]
50 Shang J, Tao Y, Chen X, et al. Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site-leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes. Genetics, 2009, 182: 1303-1311
[49]
51 Lee S K, Song M Y, Seo Y S, et al. Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil nucleotide-binding leucine-rich repeat genes. Genetics, 2009, 181: 1627-1638
[50]
52 Qu S, Liu G, Zhou B, et al. The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics, 2006, 172: 1901-1914
[51]
53 Liu X, Lin F, Wang L, et al. The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus. Genetics, 2007, 176: 2541-2549
[52]
54 Lin F, Chen S, Que Z, et al. The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1. Genetics, 2007, 177: 1871-1880
[53]
55 Hayashi N, Inoue H, Kato T, et al. Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication. Plant J, 2010, 64: 498-510
[54]
56 Okuyama Y, Kanzaki H, Abe A, et al. A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes. Plant J, 2011, 66: 467-479
[55]
57 Monosi B, Wisser R J, Pennill L, et al. Full-genome analysis of resistance gene homologues in rice. Theor Appl Genet, 2004, 109: 1434-1447
[56]
58 Block A, Alfano J. Plant targets for Pseudomonas syringae type Ⅲ effectors: virulence targets or guarded decoys? Curr Opin Microbiol, 2011, 14: 39-46
[57]
59 Feng F, Yang F, Rong W, et al. A Xanthomonas uridine 5''-monophosphate transferase inhibits plant immune kinases. Nature, 2012, 485: 114-118
[58]
60 Li W, Wang B, Wu J, et al. The Magnaporthe oryzae avirulence gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t. Mol Plant Microbe Interact, 2009, 22: 411-420
[59]
61 Yoshida K, Saitoh H, Fujisawa S, et al. Association genetics reveals three novel avirulence genes from the rice blast fungal pathogen Magnaporthe oryzae. Plant Cell, 2009, 21: 1573-1591
[60]
62 Stergiopoulos I, de Wit P J. Fungal effector proteins. Annu Rev Phytopathol, 2009, 47: 233-263
[61]
63 Moscou M J, Bogdanove A J. A simple cipher governs DNA recognition by TAL effectors. Science, 2009, 326: 1501
[62]
64 Sugio A, Yang B, Zhu T, et al. Two type Ⅲ effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFⅡAγ1 and OsTFX1 during bacterial blight of rice. Proc Natl Acad Sci USA, 2007, 104: 10720-10725
[63]
65 Dodds P N, Rathjen J P. Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet, 2010, 11: 539-548
[64]
66 Boch J, Scholze H, Schornack S, et al. Breaking the code of DNA binding specificity of TAL-type Ⅲ effectors. Science, 2009, 326: 1509-1512
[65]
67 Bedell V M, Wang Y, Campbell J M, et al. In vivo genome editing using a high-efficiency TALEN system. Nature, 2012, 491: 114-118
[66]
68 Yang Z, Fu Y. ROP/RAC GTPase signaling. Curr Opin Plant Biol, 2007, 10: 490-494
[67]
69 Miki D, Itoh R, Shimamoto K. RNA silencing of single and multiple members in a gene family of rice. Plant Physiol, 2005, 138: 1903-1913
[68]
79 Xiong L, Yang Y. Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell, 2003, 15: 745-759
[69]
80 Jung K H, Cao P, Seo Y S, et al. The rice kinase phylogenomics database: a guide for systematic analysis of the rice kinase super-family. Trends Plant Sci, 2010, 15: 595-599
[70]
81 Wu K L, Guo Z J, Wang H H, et al. The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res, 2005, 12: 9-26
[71]
82 Shimono M, Sugano S, Nakayama A, et al. Rice WRKY45 plays a crucial role in benzothiadiazole- inducible blast resistance. Plant Cell, 2007, 19: 2064-2076
[72]
83 Shimono M, Koga H, Akagi A, et al. Rice WRKY45 plays important roles in fungal and bacterial disease resistance. Mol Plant Pathol, 2012, 13: 83-94
[73]
84 Pandey S P, Somssich I E. The role of WRKY transcription factors in plant immunity. Plant Physiol, 2009, 150: 1648-1655
[74]
85 Wang H, Hao J, Chen X, et al. Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants. Plant Mol Biol, 2007, 65: 799-815
[75]
86 Zhang Y, Tessaro M J, Lassner M, et al. Knockout analysis of Arabidopsis transcription factors TGA2, TGA5, and TGA6 reveals their redundant and essential roles in systemic acquired resistance. Plant Cell, 2003, 15: 2647-2653
[76]
87 Fitzgerald H A, Canlas P E, Chern M S, et al. Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae. Plant J, 2005, 43: 335-347
[77]
88 van Loon L C, Rep M, Pieterse C M. Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol, 2006, 44: 135-162
[78]
89 Mitsuhara I, Iwai T, Seo S, et al. Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds. Mol Genet Genomics, 2008, 279: 415-427
[79]
48 Hayashi K, Yoshida H. Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter. Plant J, 2009, 57: 413-425
[80]
49 Kawano Y, Akamatsu A, Hayashi K, et al. Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity. Cell Host Microbe, 2010, 7: 362-375
[81]
90 Kim S T, Yu S, Kang Y H, et al. The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity. Plant Cell Rep, 2008, 27: 593-603
[82]
91 Park C H, Kim S, Park J Y, et al. Molecular characterization of a pathogenesis-related protein 8 gene encoding a class Ⅲ chitinase in rice. Mol Cells, 2004, 17:144-150
[83]
92 Wang N, Xiao B, Xiong L. Identification of a cluster of PR4-like genes involved in stress responses in rice. J Plant Physiol, 2011, 168: 2212-2224
[84]
93 Zhu T, Song F, Zheng Z. Molecular characterization of the rice pathogenesis-related protein, OsPR-4b, and its antifungal activity against Rhizoctonia solani. J Phytopathol, 2006, 154: 378-384
[85]
94 Yang D, Yang Y, He Z. Roles of plant hormones and their interplay in rice immunity. Mol Plant, 2013, 6: 675-85
[86]
95 Yang D L. The phytohormonal signaling pathways in rice immune responses and jasmonate signaling pathway represses gibberellin signaling pathway. Dissertation for Doctoral Degree. Chinese Academy of Sciences, 2009, D2009-118
[87]
96 Yang D, Yao J, Mei C S, et al. Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade. Proc Natl Acad Sci USA, 2012, 109: e1192
[88]
97 Dardick C, Ronald P. Plant and animal pathogen recognition receptors signal through non-RD kinases. PLoS Pathog, 2006, 2: e2
[89]
98 Zipfel C, Kunze G, Chinchilla D, et al. Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation. Cell, 2006, 125: 749-760
[90]
99 Chinchilla D, Zipfel C, Robatzek S, et al. A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature, 2007, 448: 497-500
[91]
100 Dean R A, Talbot N J, Ebbole D J, et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature, 2005, 434: 980-986
[92]
101 Lee S W, Han S W, Sririyanum M, et al. Retraction: A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science, 2013, 342: 191
[93]
71 Nakashima A, Chen L, Thao N P, et al. RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex. Plant Cell, 2008, 20: 2265-2279
[94]
72 Wang Y, Gao M, Li Q, et al. OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance. Mol Plant Microbe Interact, 2008, 21: 294-303
[95]
73 Lieberherr D, Thao N P, Nakashima A, et al. A sphingolipid elicitor-inducible mitogenactivated protein kinase is regulated by the small GTPase OsRac1 and heterotrimeric G-protein in rice. Plant Physiol, 2005, 138: 1644-1652
[96]
74 Chern M S, Fitzgerald H A, Yadav R C, et al. Evidence for a disease-resistance pathway in rice similar to the NPR1-mediated signaling pathway in Arabidopsis. Plant J, 2001, 27: 101-113
[97]
75 Chern M, Fitzgerald H A, Canlas P E, et al. Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol Plant Microbe Interact, 2005, 18: 511-520
[98]
76 Yuan Y X, Zhong S H, Li Q, et al. Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility. Plant Biotechnology Journal, 2007, 5: 313-324
[99]
77 Pitzschke A, Schikora A, Hirt H. MAPK cascade signalling networks in plant defence. Curr Opin Plant Biol, 2009, 12: 421-426
[100]
78 Reyna N S, Yang Y. Molecular analysis of the rice MAP kinase gene family in relation to Magnaporthe grisea infection. Mol Plant Microbe Interact, 2006, 19: 530-540
[101]
70 Ono E, Wong H L, Kawasaki T, et al. Essential role of the small GTPase Rac in disease resistance of rice. Proc Natl Acad Sci USA, 2001, 98: 759-764
