全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

中国杂交籼稻DNA甲基化多样性与遗传稳定性

, PP. 45-53

Keywords: 表观多样性,遗传多样性,水稻育种系

Full-Text   Cite this paper   Add to My Lib

Abstract:

水稻育种一直关注DNA序列多样性,但表观多样性(如DNA甲基化)也影响性状,不应被忽略.分析了20个杂交稻育种中广泛应用的籼稻亲本系间的DNA甲基化多样性及其遗传稳定性.结果表明,水稻育种系之间广泛存在DNA甲基化多样性;DNA甲基化与序列多样性之间存在正相关关系;DNA甲基化可以通过自交或杂交遗传给下一代.本研究揭示了DNA甲基化在水稻育种中应用的价值.

References

[1]  5 Qi X, Li Z H, Jiang L L, et al. Grain-yield heterosis in Zea mays L. shows positive correlation with parental difference in CHG methylation. Crop Sci, 2010, 50: 2338-2346
[2]  6 Habu Y, Kakutani T, Paszkowski J. Epigenetic developmental mechanisms in plants: molecules and targets of plant epigenetic regulation. Curr Opin Genet Dev, 2001, 11: 215-220
[3]  7 Kakutani T. Epi-alleles in plants: inheritance of epigenetic information over generations. Plant Cell Physiol, 2002, 43: 1106-1111
[4]  8 Guo Z, Zeng L, Li M, et al. Inheritance of DNA methylation in DH and its backcrossed lines of Brassica napus. Afr J Biotechnol, 2011, 10: 7736-7745
[5]  9 Teixeira F K, Heredia F, Sarazin A, et al. A role for RNAi in the selective correction of DNA methylation defects. Science, 2009, 323: 1600-1604
[6]  10 彭海, 张静. 胁迫与植物DNA甲基化: 育种中的潜在应用与挑战. 自然科学进展, 2009, 19: 248-256
[7]  11 谢曲, 彭海. 优质籼型三系不育系金科1A选育与利用. 杂交水稻, 2007, 22: 11-13
[8]  12 Hoagland D R, Arnon D I. The Water-culture method for growing plants without soil. In: California Agricultural Experimental Station Circular 347. 2nd ed. Berkeley: University of California, 1950
[9]  13 Keyte A L, Percifield R, Liu B, et al. Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J Hered, 2006, 97: 444-450
[10]  15 Yeh F, Yang R, Boyle T, et al. POPGEN Ver. 1.32. The user-friendly software for population genetic analysis. Edmonton: Molecular Biology and Biotechnology Center, University of Alberta, 1997
[11]  16 Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res, 1967, 27: 209-220
[12]  17 Tamura K, Peterson D, Peterson N, et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol, 2011, 28: 2731-2739
[13]  18 McClelland M, Nelson M, Raschke E. Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res, 1994, 22: 3640-3659
[14]  19 Xiong L Z, Xu C G, Saghai Maroof M A, et al. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet, 1999, 261: 439-446
[15]  20 Ashikawa I. Surveying CpG methylation at 5''-CCGG in the genomes of rice cultivars. Plant Mol Biol, 2001, 45: 31-39
[16]  21 Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA, 1973, 70: 3321-3323
[17]  22 Nimmakayala P, Vajja G, Gist R A, et al. Effect of DNA methylation on molecular diversity of watermelon heirlooms and stability of methylation specific polymorphisms across the genealogies. Euphytica, 2011, 177: 79-89
[18]  23 He G, Zhu X, Elling A A, et al. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell, 2010, 22: 17-33
[19]  24 Cokus S J, Feng S, Zhang X, et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 2008, 452: 215-219
[20]  25 Li X, Zhu J, Hu F, et al. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC Genomics, 2012, 13: 300
[21]  26 Zhang X Y, Yazaki J, Sundaresan A, et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell, 2006, 126: 1189-1201
[22]  27 Schmitz R J, Schultz M D, Urich M A, et al. Patterns of population epigenomic diversity. Nature, 2013, 495: 193-198
[23]  4 Fieldes M A. Heritable effects of 5-azacytidine treatments on the growth and development of flax (Linum usitatissimum) genotrophs and genotypes. Genome, 1994, 37: 1-11
[24]  28 刘传光, 张桂权. 用SSR标记分析1949~2005年华南地区常规籼稻主栽品种遗传多样性及变化趋势. 作物学报, 2010, 36: 1843-1852
[25]  29 Takata M, Kishima Y, Sano Y. DNA methylation polymorphisms in rice and wild rice strains: detection of epigenetic markers. Breeding Sci, 2005, 55: 57-63
[26]  30 Yang W, Yu X, Liu B. Parental epigenetic difference in DNA methylation-level may play contrasting roles for different agronomic traits related to yield heterosis in maize. Afr J Biotechnol, 2011, 10: 9253-9263
[27]  31 Levi A, Thomas C E, Newman M, et al. ISSR and AFLP markers differ among American watermelon cultivars with limited genetic diversity. J Am Soc Hortic Sci, 2004, 129: 553-558
[28]  1 Becker C, Hagmann J, Muller J, et al. Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature, 2011, 480: 245-249
[29]  2 Sha A H, Lin X H, Huang J B, et al. Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis. Mol Genet Genomics, 2005, 273: 484-490
[30]  3 Akimoto K, Katakami H, Kim H J, et al. Epigenetic inheritance in rice plants. Ann Bot (Lond), 2007, 100: 205-217
[31]  14 Ajibade S R, Weeden N F, Chite S M. Inter simple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica, 2000, 111: 47-55
[32]  32 彭海, 席婷, 张静, 等. 胁迫条件下植物DNA甲基化的稳定性. 中国农业科学, 2011, 44: 2431-2438
[33]  33 Schmitz R J, Schultz M D, Lewsey M G, et al. Transgenerational epigenetic instability is a source of novel methylation variants. Science, 2011, 334: 369-373
[34]  34 Messeguer R, Ganal M W, Steffens J C, et al. Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA. Plant Mol Biol, 1991, 16: 753-770
[35]  35 Greaves I K, Groszmann M, Ying H, et al. Trans chromosomal methylation in Arabidopsis hybrids. Proc Natl Acad Sci USA, 2012, 109: 3570-3575
[36]  36 Birchler J A, Auger D L, Riddle N C. In search of the molecular basis of heterosis. Plant Cell, 2003, 15: 2236-2239
[37]  37 Swanson-Wagner R A, Jia Y, DeCook R, et al. All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci USA, 2006, 103: 6805-6810
[38]  38 Springer N M, Stupar R M. Allelic variation and heterosis in maize: how do two halves make more than a whole? Genome Res, 2007, 17: 264-275
[39]  39 Tarutani Y, Shiba H, Iwano M, et al. Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility. Nature, 2010, 466: 983-986
[40]  40 Zhang M S, Yan H Y, Zhao N, et al. Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids. Theor Appl Genet, 2007, 115: 195-207
[41]  41 Zhao X, Chai Y, Liu B. Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybrids. Plant Sci, 2007, 172: 930-938

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133