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印度谷螟线粒体基因组测定及螟蛾总科系统发育分析

DOI: 10.1360/N052015-00193, PP. 890-900

Keywords: 昆虫,鳞翅目,螟蛾科,草螟科,线粒体基因组,系统发育

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Abstract:

线粒体基因组广泛应用于昆虫系统进化、种群遗传学及谱系地理学等众多研究领域.印度谷螟(Plodiainterpunctella)属鳞翅目螟蛾科,是世界性重要仓储害虫.为了深入了解螟蛾总科昆虫的系统进化关系,本研究测定并分析了印度谷螟的全线粒体基因组.印度谷螟线粒体基因组全长15264bp,包括13个蛋白编码基因、22个转运RNA基因、2个核糖体RNA基因和一个大的非编码区(线粒体控制区).比较线粒体基因组学分析表明,线粒体基因组的基因排序、碱基组成、密码子使用、控制区的序列结构以及转运RNA基因的二级结构,在已测的25种螟蛾总科昆虫中高度保守.线粒体蛋白编码基因的进化模式分析表明,13个基因的进化速率在螟蛾科和草螟科间存在明显差异.基于13个蛋白编码基因对螟蛾总科的9个亚科的系统发育分析显示,贝叶斯树和最大似然树均高度支持螟蛾科和草螟科为2个单系群.在螟蛾科中,斑螟亚科与丛螟亚科具有更近的亲缘关系.草螟科包括2个分支,一支由野螟亚科和斑野螟亚科构成,另一支包括草螟亚科、水螟亚科、苔螟亚科和禾螟亚科等4个亚科.

References

[1]  1 Boore J L. Animal mitochondrial genomes. Nucleic Acids Res, 1999, 27: 1767-1780
[2]  2 Cameron S L. Insect mitochondrial genomics: implications for evolution and phylogeny. Annu Rev Entomol, 2014, 59: 95-117
[3]  3 Wolstenholme D R. Animal mitochondrial DNA: structure and evolution. Int Rev Cytol, 1992, 141: 173-216
[4]  4 Boore J L. The use of genome-level characters for phylogenetic reconstruction. Trends Ecol Evol, 2006, 21: 439-446
[5]  5 Yuan M L, Wei D D, Wang B J, et al. The complete mitochondrial genome of the citrus red mite Panonychus citri (Acari: Tetranychidae): high genome rearrangement and extremely truncated tRNAs. BMC Genomics, 2010, 11: 597
[6]  6 Masta S E. Mitochondrial rRNA secondary structures and genome arrangements distinguish chelicerates: comparisons with a harvestman (Arachnida: Opiliones: Phalangium opilio). Gene, 2010, 449: 9-21
[7]  7 Dowton M, Castro L R, Austin A D. Mitochondrial gene rearrangements as phylogenetic characters in the invertebrates: the examination of genome ‘morphology''. Invertebr Syst, 2002, 16: 345-356
[8]  8 Simon C, Buckley T R, Frati F, et al. Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annu Rev Ecol Evol Syst, 2006, 37: 545-579
[9]  9 Avise J C. Phylogeography: retrospect and prospect. J Biogeogr, 2009, 36: 3-15
[10]  10 Wang I J. Recognizing the temporal distinctions between landscape genetics and phylogeography. Mol Ecol, 2010, 19: 2605-2608
[11]  11 Solis M. Phylogenetic studies and modern classification of the Pyraloidea (Lepidoptera). Rev Colomb Entomol, 2007, 33: 1-8
[12]  12 马晓静. 河南螟蛾总科昆虫的分类、区系及分布地理研究. 硕士学位论文. 郑州: 郑州大学, 2010
[13]  13 Regier J C, Mitter C, Solis M, et al. A molecular phylogeny for the pyraloid moths (Lepidoptera: Pyraloidea) and its implications for higher-level classification. Syst Entomol, 2012, 37: 635-656
[14]  14 Cao S S, Yu W W, Sun M, et al. Characterization of the complete mitochondrial genome of Tryporyza incertulas, in comparison with seven other Pyraloidea moths. Gene, 2014, 533: 356-365
[15]  15 Hoflehner E, Binder M, Hemmer W, et al. Thioredoxin from the indianmeal moth Plodia interpunctella: cloning and test of the allergenic potential in mice. PLoS One, 2012, 7: e42026
[16]  16 Campos M, Phillips T W. Contact toxicity of insecticides for attract-and-kill applications against adult Plodia interpunctella (Hübner) (Lepidoptera: Pyralidae). Pest Manag Sci, 2010, 66: 752-761
[17]  17 Hall T A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Sym Ser, 1999, 41: 95-98
[18]  18 Yuan M L, Zhang Q L, Guo Z L, et al. The complete mitochondrial genome of Corizus tetraspilus (Hemiptera: Rhopalidae) and phylogenetic analysis of Pentatomomorpha. PLoS One, 2015, 10: e0129003
[19]  19 Tamura K, Stecher G, Peterson D, et al. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol, 2013, 30: 2725-2729
[20]  20 Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 2009, 25: 1451-1452
[21]  21 Perna N T, Kocher T D. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J Mol Evol, 1995, 41: 353-358
[22]  22 Liao F, Wang L, Wu S, et al. The complete mitochondrial genome of the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae). Int J Biol Sci, 2010, 6: 172-186
[23]  23 朱雅君, 周国梁, 房蕊, 等. 舞毒蛾线粒体DNA全序列分析. 植物检疫, 2010, 24: 6-11
[24]  24 Yuan M L, Zhang Q L. The complete mitochondrial genome of Gynaephora menyuanensis (Lepidoptera: Lymantriidae) from the Qinghai-Tibetan Plateau. Mitochondrial DNA, 2013, 24: 328-330
[25]  25 Abascal F, Zardoya R, Telford M J. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res, 2010, 38: W7-W13
[26]  26 Lanfear R, Calcott B, Ho S Y, et al. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol, 2012, 29: 1695-1701
[27]  27 Miller M A, Pfeiffer W, Schwartz T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Gateway Computing Environments Workshop (GCE), 2010 Nov. 14, New Orleans. New York: IEEE, 2010. 1-8
[28]  28 Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 2014, 30: 1312-1313
[29]  29 Ronquist F, Teslenko M, van der Mark P, et al. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol, 2012, 61: 539-542
[30]  30 Ojala D, Montoya J, Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature, 1981, 290: 470-474
[31]  31 Lavrov D V, Boore J L, Brown W M. Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. Mol Biol Evol, 2002, 19: 163-169
[32]  32 Saito S, Tamura K, Aotsuka T. Replication origin of mitochondrial DNA in insects. Genetics, 2005, 171: 1695-1705
[33]  33 Dong W W, Feng X J, Huang G H, et al. Characterization of the mitochondrial genome of the cabbage webworm, Hellula undalis (Lepidoptera: Pyralidae). Mitochondrial DNA, 2014, doi:10.3109/19401736.2014.926491

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