The past ten years have seen an explosion of information concerning host restriction factors that inhibit the replication of HIV-1 and other retroviruses. Among these factors is TRIM5, an innate immune signaling molecule that recognizes the capsid lattice as soon as the retrovirion core is released into the cytoplasm of otherwise susceptible target cells. Recognition of the capsid lattice has several consequences that include multimerization of TRIM5 into a complementary lattice, premature uncoating of the virion core, and activation of TRIM5 E3 ubiquitin ligase activity. Unattached, K63-linked ubiquitin chains are generated that activate the TAK1 kinase complex and downstream inflammatory mediators. Polymorphisms in the capsid recognition domain of TRIM5 explain the observed species-specific differences among orthologues and the relatively weak anti-HIV-1 activity of human TRIM5. Better understanding of the complex interaction between TRIM5 and the retrovirus capsid lattice may someday lead to exploitation of this interaction for the development of potent HIV-1 inhibitors. 1. Introduction HIV-1 was identified only two years after the first report of AIDS in 1981 [1]. The HIV-1 genome was cloned and sequenced, ORFs were identified, and functions of the gene products pinpointed. At a time when few antivirals were in clinical use, HIV-1 proteins were isolated, their activities were described, their structures were determined, and inhibitors were identified [2–5]. The first anti-HIV-1 drug, AZT, was approved for patients in 1987, and effective combinations of anti-HIV-1 drugs were in the clinic by the mid-1990s. Thanks to these anti-HIV-1 drugs, the number of AIDS cases plummeted in countries like the United States. HIV-1 infection became an outpatient disease. Yet, despite the impact of basic science on disease in individuals with HIV-1 infection, the AIDS pandemic has not gone away. 2. Ongoing Pandemic and the Need for More Basic Research Failure to control the AIDS pandemic may be attributable to a number of factors, including the need for improvement in drugs and more ready access to those drugs that already exist. Aside from one extraordinary case of a person who underwent bone marrow transplantation with cells from a CCR5-defective donor [6], there has been no documented cure of HIV-1 infection. Aside from a small effect in one vaccination trial [7], there is no evidence for prevention of HIV-1 infection in people by a vaccine. Without prospects for curative drugs or a preventive vaccine, the cost of HIV-1 infection to individuals and to society will
References
[1]
F. Barré-Sinoussi, J. C. Chermann, F. Rey et al., “Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS),” Science, vol. 220, pp. 868–871, 1983.
[2]
J. C.-H. Chen, J. Krucinski, L. J. W. Miercke et al., “Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding,” Proceedings of the National Academy of Sciences of the United States of America, vol. 97, no. 15, pp. 8233–8238, 2000.
[3]
E. E. Kim, C. T. Baker, M. D. Dwyer et al., “Crystal structure of HIV-1 protease in complex with VX-478, a potent and orally bioavailable inhibitor of the enzyme,” Journal of the American Chemical Society, vol. 117, no. 3, pp. 1181–1182, 1995.
[4]
S. G. Sarafianos, K. Das, C. Tantillo et al., “Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA,” EMBO Journal, vol. 20, no. 6, pp. 1449–1461, 2001.
[5]
B. G. Turner and M. F. Summers, “Structural biology of HIV,” Journal of Molecular Biology, vol. 285, no. 1, pp. 1–32, 1999.
[6]
G. Hütter, D. Nowak, M. Mossner et al., “Long-term control of HIV by CCR5 delta32/delta32 stem-cell transplantation,” The New England Journal of Medicine, vol. 360, no. 7, pp. 692–698, 2009.
[7]
S. Rerks-Ngarm, P. Pitisuttithum, S. Nitayaphan et al., “Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand,” The New England Journal of Medicine, vol. 361, no. 23, pp. 2209–2220, 2009.
[8]
P. Cherepanov, G. Maertens, P. Proost et al., “HIV-1 integrase forms stable tetramers and associates with LEDGF/p75 protein in human cells,” Journal of Biological Chemistry, vol. 278, no. 1, pp. 372–381, 2003.
[9]
J. Luban, K. L. Bossolt, E. K. Franke, G. V. Kalpana, and S. P. Goff, “Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B,” Cell, vol. 73, no. 6, pp. 1067–1078, 1993.
[10]
F. Christ, A. Voet, A. Marchand et al., “Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication,” Nature Chemical Biology, vol. 6, no. 6, pp. 442–448, 2010.
[11]
E. K. Franke and J. Luban, “Inhibition of HIV-1 replication by cyclosporine A or related compounds correlates with the ability to disrupt the Gag-cyclophilin A interaction,” Virology, vol. 222, no. 1, pp. 279–282, 1996.
[12]
M. Thali, A. Bukovsky, E. Kondo et al., “Functional association of cyclophilin A with HIV-1 virions,” Nature, vol. 372, no. 6504, pp. 363–365, 1994.
[13]
G. Gao and S. P. Goff, “Somatic cell mutants resistant to retrovirus replication: intracellular blocks during the early stages of infection,” Molecular Biology of the Cell, vol. 10, no. 6, pp. 1705–1717, 1999.
[14]
G. Gao, X. Guo, and S. P. Goff, “Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein,” Science, vol. 297, no. 5587, pp. 1703–1706, 2002.
[15]
K. Lee, Z. Ambrose, T. D. Martin et al., “Flexible Use of Nuclear Import Pathways by HIV-1,” Cell Host and Microbe, vol. 7, no. 3, pp. 221–233, 2010.
[16]
S. T. Valente, G. M. Gilmartin, K. Venkatarama, G. Arriagada, and S. P. Goff, “HIV-1 mRNA 3′ end processing is distinctively regulated by eIF3f, CDK11, and splice factor 9G8,” Molecular Cell, vol. 36, no. 2, pp. 279–289, 2009.
[17]
A. L. Brass, D. M. Dykxhoorn, Y. Benita et al., “Identification of host proteins required for HIV infection through a functional genomic screen,” Science, vol. 319, no. 5865, pp. 921–926, 2008.
[18]
F. D. Bushman, N. Malani, J. Fernandes et al., “Host cell factors in HIV replication: meta-analysis of genome-wide studies,” PLoS Pathogens, vol. 5, no. 5, Article ID e1000437, 2009.
[19]
R. K?nig, Y. Zhou, D. Elleder et al., “Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication,” Cell, vol. 135, no. 1, pp. 49–60, 2008.
[20]
M. L. Yeung, L. Houzet, V. S. R. K. Yedavalli, and K.-T. Jeang, “A genome-wide short hairpin RNA screening of Jurkat T-cells for human proteins contributing to productive HIV-1 replication,” Journal of Biological Chemistry, vol. 284, no. 29, pp. 19463–19473, 2009.
[21]
H. Zhou, M. Xu, Q. Huang et al., “Genome-scale RNAi screen for host factors required for HIV replication,” Cell Host and Microbe, vol. 4, no. 5, pp. 495–504, 2008.
[22]
F. Christ, W. Thys, J. De Rijck et al., “Transportin-SR2 Imports HIV into the nucleus,” Current Biology, vol. 18, no. 16, pp. 1192–1202, 2008.
[23]
A. De Iaco and J. Luban, “Inhibition of HIV-1 infection by TNPO3 depletion is determined by capsid and detectable after viral cDNA enters the nucleus,” Retrovirology, vol. 8, article 98, 2011.
[24]
L. Krishnan, K. A. Matreyek, I. Oztop et al., “The requirement for cellular transportin 3 (TNPO3 or TRN-SR2) during infection maps to human immunodeficiency virus type 1 capsid and not integrase,” Journal of Virology, vol. 84, no. 1, pp. 397–406, 2010.
[25]
L. Zhou, E. Sokolskaja, C. Jolly, W. James, S. A. Cowley, and A. Fassati, “Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration,” PLoS Pathogens, vol. 7, Article ID e1002194.
[26]
K. Strebel, J. Luban, and K.-T. Jeang, “Human cellular restriction factors that target HIV-1 replication,” BMC Medicine, vol. 7, article 48, 2009.
[27]
S. L. Sawyer, M. Emerman, and H. S. Malik, “Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G,” PLoS Biology, vol. 2, no. 9, Article ID E275, 2004.
[28]
S. L. Sawyer, L. I. Wu, M. Emerman, and H. S. Malik, “Positive selection of primate TRIM5α identifies a critical species-specific retroviral restriction domain,” Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 8, pp. 2832–2837, 2005.
[29]
S. Best, P. L. Tissier, G. Towers, and J. P. Stoye, “Positional cloning of the mouse retrovirus restriction gene Fv1,” Nature, vol. 382, no. 6594, pp. 826–829, 1996.
[30]
T. Pincus, W. P. Rowe, and F. Lilly, “A major genetic locus affecting resistance to infection with murine leukemia viruses. II. Apparent identity to a major locus described for resistance to friend murine leukemia virus,” Journal of Experimental Medicine, vol. 133, no. 6, pp. 1234–1241, 1971.
[31]
E. K. Franke, H. E. H. Yuan, and J. Luban, “Specific incorporation of cyclophilin A into HIV-1 virions,” Nature, vol. 372, no. 6504, pp. 359–362, 1994.
[32]
J. Luban, “Cyclophilin A, TRIM5, and resistance to human immunodeficiency virus type 1 infection,” Journal of Virology, vol. 81, no. 3, pp. 1054–1061, 2007.
[33]
L. Yuan, A. K. Kar, and J. Sodroski, “Target cell type-dependent modulation of human immunodeficiency virus type 1 capsid disassembly by cyclophilin A,” Journal of Virology, vol. 83, no. 21, pp. 10951–10962, 2009.
[34]
J. Luban, “Absconding with the chaperone: essential cyclophilin-gag interaction in HIV-1 virions,” Cell, vol. 87, no. 7, pp. 1157–1159, 1996.
[35]
M. Qi, R. Yang, and C. Aiken, “Cyclophilin A-dependent restriction of human immunodeficiency virus type 1 capsid mutants for infection of nondividing cells,” Journal of Virology, vol. 82, no. 24, pp. 12001–12008, 2008.
[36]
C. Song and C. Aiken, “Analysis of human cell heterokaryons demonstrates that target cell restriction of cyclosporine-resistant human immunodeficiency virus type 1 mutants is genetically dominant,” Journal of Virology, vol. 81, no. 21, pp. 11946–11956, 2007.
[37]
K. Lee, A. Mulky, W. Yuen et al., “HIV-1 capsid targeting domain of cleavage and polyadenylation specificity factor 6,” Journal of Virology, vol. 86, no. 7, pp. 3851–3860, 2012.
[38]
D. M. Sayah, E. Sokolskaja, L. Berthoux, and J. Luban, “Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1,” Nature, vol. 430, no. 6999, pp. 569–573, 2004.
[39]
G. Brennan, Y. Kozyrev, and S.-L. Hu, “TRIMCyp expression in old world primates macaca nemestrina and macaca fascicularis,” Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 9, pp. 3569–3574, 2008.
[40]
R. M. Newman, L. Hall, A. Kirmaier et al., “Evolution of a TRIM5-CypA splice isoform in old world monkeys,” PLoS Pathogens, vol. 4, no. 2, Article ID e1000003, 2008.
[41]
C. A. Virgen, Z. Kratovac, P. D. Bieniasz, and T. Hatziioannou, “Independent genesis of chimeric TRIM5-cyclophilin proteins in two primate species,” Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 9, pp. 3563–3568, 2008.
[42]
S. J. Wilson, B. L. J. Webb, L. M. J. Ylinen, E. Verschoor, J. L. Heeney, and G. J. Towers, “Independent evolution of an antiviral TRIMCyp in rhesus macaques,” Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 9, pp. 3557–3562, 2008.
[43]
T. Schaller, K. E. Ocwieja, J. Rasaiyaah et al., “HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency,” PLoS Pathogens, vol. 7, Article ID e1002439, 2011.
[44]
J. Balzarini, E. De Clercq, and K. Uberla, “SIV/HIV-1 hybrid virus expressing the reverse transcriptase gene of HIV-1 remains sensitive to HIV-1-specific reverse transcriptase inhibitors after passage in rhesus macaques,” Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology, vol. 15, no. 1, pp. 1–4, 1997.
[45]
S. Himathongkham and P. A. Luciw, “Restriction of HIV-1 (subtype B) replication at the entry step in rhesus macaque cells,” Virology, vol. 219, no. 2, pp. 485–488, 1996.
[46]
W. Hofmann, D. Schubert, J. LaBonte et al., “Species-specific, postentry barriers to primate immunodeficiency virus infection,” Journal of Virology, vol. 73, no. 12, pp. 10020–10028, 1999.
[47]
J. Li, C. I. Lord, W. Haseltine, N. L. Letvin, and J. Sodroski, “Infection of cynomolgus monkeys with a chimeric HIV-1/SIV(mac) virus that expresses the HIV-1 envelope glycoproteins,” Journal of Acquired Immune Deficiency Syndromes, vol. 5, no. 7, pp. 639–646, 1992.
[48]
R. Shibata, M. Kawamura, H. Sakai, M. Hayami, A. Ishimoto, and A. Adachi, “Generation of a chimeric human and simian immunodeficiency virus infectious to monkey peripheral blood mononuclear cells,” Journal of Virology, vol. 65, no. 7, pp. 3514–3520, 1991.
[49]
C. Besnier, Y. Takeuchi, and G. Towers, “Restriction of lentivirus in monkeys,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 18, pp. 11920–11925, 2002.
[50]
S. Cowan, T. Hatziioannou, T. Cunningham, M. A. Muesing, H. G. Gottlinger, and P. D. Bieniasz, “Cellular inhibitors with Fv1-like activity restrict human and simian immunodeficiency virus tropism,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 18, pp. 11914–11919, 2002.
[51]
C. Münk, S. M. Brandt, G. Lucero, and N. R. Landau, “A dominant block to HIV-1 replication at reverse transcription in simian cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 21, pp. 13843–13848, 2002.
[52]
M. Stremlau, C. M. Owens, M. J. Perron, M. Kiessling, P. Autissier, and J. Sodroski, “The cytoplasmic body component TRIM5α restricts HIV-1 infection in old world monkeys,” Nature, vol. 427, no. 6977, pp. 848–853, 2004.
[53]
S. Nisole, C. Lynch, J. P. Stoye, and M. W. Yap, “A Trim5-cyclophilin A fusion protein found in owl monkey kidney cells can restrict HIV-1,” Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 36, pp. 13324–13328, 2004.
[54]
M. Stremlau, M. Perron, S. Welikala, and J. Sodroski, “Species-specific variation in the B30.2(SPRY) domain of TRIM5α determines the potency of human immunodeficiency virus restriction,” Journal of Virology, vol. 79, no. 5, pp. 3139–3145, 2005.
[55]
M. W. Yap, S. Nisole, and J. P. Stoye, “A single amino acid change in the SPRY domain of human Trim5α leads to HIV-1 restriction,” Current Biology, vol. 15, no. 1, pp. 73–78, 2005.
[56]
E. Battivelli, D. Lecossier, S. Matsuoka, J. Migraine, F. Clavel, and A. J. Hance, “Strain-specific differences in the impact of human TRIM5α, different TRIM5α alleles, and the inhibition of capsid-cyclophilin a interactions on the infectivity of HIV-1,” Journal of Virology, vol. 84, no. 21, pp. 11010–11019, 2010.
[57]
E. Battivelli, J. Migraine, D. Lecossier, P. Yeni, F. Clavel, and A. J. Hance, “Gag cytotoxic T lymphocyte escape mutations can increase sensitivity of HIV-1 to human TRIM5alpha, linking intrinsic and acquired immunity,” Journal of Virology, vol. 85, pp. 11846–11854, 2011.
[58]
S. Sebastian and J. Luban, “TRIM5α selectively binds a restriction-sensitive retroviral capsid,” Retrovirology, vol. 2, article 40, 2005.
[59]
M. Stremlau, M. Perron, M. Lee et al., “Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5α restriction factor,” Proceedings of the National Academy of Sciences of the United States of America, vol. 103, no. 14, pp. 5514–5519, 2006.
[60]
B. K. Ganser-Pornillos, V. Chandrasekaran, O. Pornillos, J. G. Sodroski, W. I. Sundquist, and M. Yeager, “Hexagonal assembly of a restricting TRIM5alpha protein,” Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 2, pp. 534–539, 2011.
[61]
I.-J. L. Byeon, X. Meng, J. Jung et al., “Structural convergence between Cryo-EM and NMR reveals intersubunit interactions critical for HIV-1 capsid function,” Cell, vol. 139, no. 4, pp. 780–790, 2009.
[62]
O. Pornillos, B. K. Ganser-Pornillos, B. N. Kelly et al., “X-ray structures of the hexameric building block of the hiv capsid,” Cell, vol. 137, no. 7, pp. 1282–1292, 2009.
[63]
T. Pertel, S. Hausmann, D. Morger et al., “TRIM5 is an innate immune sensor for the retrovirus capsid lattice,” Nature, vol. 472, no. 7343, pp. 361–365, 2011.
[64]
G. Zhao, D. Ke, T. Vu et al., “Rhesus TRIM5α disrupts the HIV-1 capsid at the inter-hexamer interfaces,” PLoS Pathogens, vol. 7, no. 3, Article ID e1002009, 2011.
[65]
G. Arriagada, L. N. Muntean, and S. P. Goff, “SUMO-interacting motifs of human TRIM5α are important for antiviral activity,” PLoS Pathogens, vol. 7, no. 4, Article ID e1002019, 2011.
[66]
K. Han, D. I. Lou, and S. L. Sawyer, “Identification of a genomic reservoir for new trim genes in primate genomes,” PLoS Genetics, vol. 7, Article ID e1002388.
[67]
F. Diaz-Griffero, X.-R. Qin, F. Hayashi et al., “A B-box 2 surface patch important for TRIM5α self-association, capsid binding avidity, and retrovirus restriction,” Journal of Virology, vol. 83, no. 20, pp. 10737–10751, 2009.
[68]
X. Li and J. Sodroski, “The TRIM5α B-box 2 domain promotes cooperative binding to the retroviral capsid by mediating higher-order self-association,” Journal of Virology, vol. 82, no. 23, pp. 11495–11502, 2008.
[69]
L. Xu, L. Yang, P. K. Moitra et al., “BTBD1 and BTBD2 colocalize to cytoplasmic bodies with the RBCC/tripartite motif protein, TRIM5δ,” Experimental Cell Research, vol. 288, no. 1, pp. 84–93, 2003.
[70]
M. Lienlaf, F. Hayashi, F. Di Nunzio et al., “Contribution of E3-ubiquitin ligase activity to HIV-1 restriction by TRIM5alpha(rh): structure of the RING domain of TRIM5alpha,” Journal of Virology, vol. 85, pp. 8725–8737, 2011.
[71]
F. Diaz-Griffero, X. Li, H. Javanbakht et al., “Rapid turnover and polyubiquitylation of the retroviral restriction factor TRIM5,” Virology, vol. 349, no. 2, pp. 300–315, 2006.
[72]
C. J. Rold and C. Aiken, “Proteasomal degradation of TRIM5α during retrovirus restriction,” PLoS Pathogens, vol. 4, no. 5, Article ID e1000074, 2008.
[73]
Z. Lukic, S. Hausmann, S. Sebastian et al., “TRIM5alpha associates with proteasomal subunits in cells while in complex with HIV-1 virions,” Retrovirology, vol. 8, article 93, 2011.
[74]
C. O'Connor, T. Pertel, S. Gray et al., “p62/sequestosome-1 associates with and sustains the expression of retroviral restriction factor TRIM5α,” Journal of Virology, vol. 84, no. 12, pp. 5997–6006, 2010.
[75]
L. Berthoux, S. Sebastian, E. Sokolskaja, and J. Luban, “Lv1 inhibition of human immunodeficiency virus type 1 is counteracted by factors that stimulate synthesis or nuclear translocation of viral cDNA,” Journal of Virology, vol. 78, no. 21, pp. 11739–11750, 2004.
[76]
A. Roa, F. Hayashi, Y. Yang et al., “Ring domain mutations uncouple TRIM5α restriction of HIV-1 from inhibition of reverse transcription and acceleration of uncoating,” Journal of Virology, vol. 86, pp. 1717–1727, 2012.
[77]
X. Wu, J. L. Anderson, E. M. Campbell, A. M. Joseph, and T. J. Hope, “Proteasome inhibitors uncouple rhesus TRIM5α restriction of HIV-1 reverse transcription and infection,” Proceedings of the National Academy of Sciences of the United States of America, vol. 103, no. 19, pp. 7465–7470, 2006.
[78]
K. Allers, G. Hütter, J. Hofmann et al., “Evidence for the cure of HIV infection by CCR5Δ32/Δ32 stem cell transplantation,” Blood, vol. 117, no. 10, pp. 2791–2799, 2011.
[79]
N. Holt, J. Wang, K. Kim et al., “Human hematopoietic stem/progenitor cells modified by zinc-finger nucleases targeted to CCR5 control HIV-1 in vivo,” Nature Biotechnology, vol. 28, no. 8, pp. 839–847, 2010.
[80]
M. R. Neagu, P. Ziegler, T. Pertel et al., “Potent inhibition of HIV-1 by TRIM5-cyclophilin fusion proteins engineered from human components,” Journal of Clinical Investigation, vol. 119, no. 10, pp. 3035–3047, 2009.