Chlorophyll a fluorometry has long been used as a method to study phytoplankton in the ocean. In situ fluorometry is used frequently in oceanography to provide depth-resolved estimates of phytoplankton biomass. However, the high price of commercially manufactured in situ fluorometers has made them unavailable to some individuals and institutions. Presented here is an investigation into building an in situ fluorometer using low cost electronics. The goal was to construct an easily reproducible in situ fluorometer from simple and widely available electronic components. The simplicity and modest cost of the sensor makes it valuable to students and professionals alike. Open source sharing of architecture and software will allow students to reconstruct and customize the sensor on a small budget. Research applications that require numerous in situ fluorometers or expendable fluorometers can also benefit from this study. The sensor costs US$150.00 and can be constructed with little to no previous experience. The sensor uses a blue LED to excite chlorophyll a and measures fluorescence using a silicon photodiode. The sensor is controlled by an Arduino microcontroller that also serves as a data logger.
References
[1]
Babin, M. Phytoplankton Fluorescence: Theory, Current Literature and in-situ Measurement. In Real-Time Coastal Observing System for Marine Ecosystem Dynamics and Harmful Algal Blooms; Marcel, B., Collin, S.R., John, J.C., Eds.; United Nations Educational, Scientific and Cultural Organization: Paris, France, 2008; pp. 237–280.
[2]
Lorenzen, C.J. A method for the continuous measurement of in vivo chlorophyll concentration. Deep Sea Res. 1966, 13, 223–227.
Gower, J.F.R.; Brown, L.; Borstad, G.A. Observation of chlorophyll fluorescence in west coast waters of Canada using the MODIS satellite sensor. Can. J. Remote Sens. 2004, 30, 17–25.
Moore, G.E. Cramming more components onto integrated circuits. Proc. IEEE 1998, 86, 82–85.
[7]
Schofield, G.G. PicoGmeter, a custom-made fluorometer for the quantification of dsDNA by PicoGreen fluorescence. BioTechniques 2004, 37, 778–782.
[8]
Kostov, Y.; Rao, G. Low-cost optical instrumentation for biomedical measurements. Rev. Sci. Instr. 2000, 71, 4361–4374.
[9]
Knap, A.H.; Michaels, A.; Close, A.R.; Ducklow, H.; Dickson, A. Protocols for the Joint Global Ocean Flux Study (JGOFS) Core Measurements; JGOFS Core Project Office, Centre for Studies of Environment and Resources, University of Bergen: Bergen, Norway, 1996.
[10]
Thomas, J.B.; Flight, W.F.G. Fuorescence responses of chlorophyll in vivo to treatment with acetone. Biochim. Et Biophys. Acta 1964, 79, 500–510.
[11]
Cullen, J.J. The deep chlorophyll maximum: comparing vertical profiles of chlorophyll a. Can. J. Fish. Aquat. Sci. 1982, 39, 791–803.
[12]
Boss, E.; Taylor, L.; Gilbert, S.; Gundersen, K.; Hawley, N.; Janzen, C.; Johengen, T.; Purcell, H.; Robertson, C.; Schar, D.W.H.; et al. Comparison of inherent optical properties as a surrogate for particulate matter concentration in coastal waters. Limnol. Oceanogr. Meth. 2009, 7, 803–810.
[13]
Mayer, L.M.; Townsend, D.W.; Pettigrew, N.R.; Loder, T.C.; Wong, M.W.; Kistner-Morris, D.; Laursetn, A.K.; Schoudel, A.D.; Conairis, C.; Brown, J.; et al. The Kennebec, Sheepscot and Damariscotta River Estuaries: Seasonal Oceanographic Data; Department of Oceanography, University of Maine: Orono, ME, USA, 1996; pp. 1–110.
[14]
Incze, L.S.; Yentsch, C.M. Stable density fronts and dinoflagellate patches in a tidal estuary. Est. Coast. Shelf Sci. 1981, 13, 547–556.
[15]
O'Donnell, K.P.; Chen, X. Temperature depended of semiconductor band gaps. Appl. Phys. Lett. 1991, 58, 2924–2926.
[16]
Irwin, A.J.; Finkel, Z.V. Mining a sea of data: Deducing the environmental controls of ocean chlorophyll. PLoS One 2008, 3, e3836.
[17]
Singer, V.L.; Jones, L.J.; Yue, S.T.; Haugland, R.P. Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation. Anal. Biochem. 1997, 249, 228–238.