全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

Sulfonamide Based β-Carbonic Anhydrase Inhibitors: 2D QSAR Study

DOI: 10.1155/2013/107840

Full-Text   Cite this paper   Add to My Lib

Abstract:

The carbonic anhydrases (CAs) (or carbonate dehydratases) form a family of metalloenzymes that catalyze the rapid interconversion of carbon dioxide and water to bicarbonate and protons (or vice versa), a reversible reaction that occurs rather slowly in the absence of a catalyst. The β-CAs have been characterized in a high number of human pathogens, such as the fungi/yeasts Candida albicans, Candida glabrata, Cryptococcus neoformans, and Saccharomyces cerevisiae and the bacteria Helicobacter pylori, Mycobacterium tuberculosis, Haemophilus influenzae, Brucella suis, and Streptococcus pneumonia. The β-CAs in microorganisms provide physiological concentration of carbon dioxide and bicarbonate (CO2/ ) for their growth. Inhibition of β-CAs from the pathogenic microorganism is recently being explored as a novel pharmacological target to treat infections caused by the these organisms. The present study aimed to establish a relationship between the β-CAs inhibitory activity for structurally related sulphonamide derivatives and the physicochemical descriptors in quantitative terms. The statistically validated two-dimensional quantitative structure activity relationship (2D QSAR) model was obtained through multiple linear regression (MLR) analysis method using Vlife molecular design suits (MDS). Five descriptors showing positive and negative correlation with the β-CAs inhibitory activity have been included in the model. This validated 2D QSAR model may be used to design sulfonamide derivatives with better inhibitory properties. 1. Introduction The CAs belong to the family of metalloenzymes that catalyze the rapid interconversion of carbon dioxide and water to bicarbonate and protons (or vice versa), a reversible reaction that occurs rather slowly in the absence of a catalyst. The active site of most carbonic anhydrases contains a zinc ion [1]. Genetically five different types of CAs enzymes are known till date. The α-CAs are present in vertebrates, protozoa, algae, and some bacteria and also in cytoplasm of green plants [2]. While the β-CAs are predominantly found in bacteria, algae, chloroplasts of both mono- and dicotyledons and some fungi and archaea [3], the γ-CAs are found in archaea and some bacteria [4]. Both the δ-and ζ-CAs forms are present only in marine diatoms [5]. These enzymes which catalyze the interconversion between carbon dioxide and bicarbonate, with release of a proton, are involved not only in pH homeostasis and regulation but also in biosynthetic reactions, such as gluconeogenesis and ureagenesis in animals, CO2 fixation (in plants and

References

[1]  C. T. Supuran, “Carbonic anhydrases: novel therapeutic applications for inhibitors and activators,” Nature Reviews Drug Discovery, vol. 7, no. 2, pp. 168–181, 2008.
[2]  A. Scozzafava, A. Mastrolorenzo, and C. T. Supuran, “Carbonic anhydrase inhibitors and activators and their use in therapy,” Expert Opinion on Therapeutic Patents, vol. 16, no. 12, pp. 1627–1664, 2006.
[3]  C. T. Supuran, A. Scozzafava, and A. Casini, “Carbonic anhydrase inhibitors,” Medicinal Research Reviews, vol. 23, no. 2, pp. 146–189, 2003.
[4]  Y. Xu, L. Feng, P. D. Jeffrey, Y. Shi, and F. M. M. Morel, “Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms,” Nature, vol. 452, no. 7183, pp. 56–61, 2008.
[5]  T. Stams and D. W. Christianson, “X-ray crystallographic studies of mammalian carbonic anhydrase isozymes,” in The Carbonic Anhydrases—New Horizons, W. R. Chegwidden, N. D. Carter, and Y. H. Edwards, Eds., pp. 159–174, Birkh?user, Basel, Switzerland, 2000.
[6]  A. Thiry, J.-M. Dogné, B. Masereel, and C. T. Supuran, “Targeting tumor-associated carbonic anhydrase IX in cancer therapy,” Trends in Pharmacological Sciences, vol. 27, no. 11, pp. 566–573, 2006.
[7]  C. T. Supuran, A. Casini, A. Mastrolorenzo, and A. Scozzafava, “COX-2 selective inhibitors, carbonic anhydrase inhibition and anticancer properties of sulfonamides belonging to this class of pharmacological agents,” Mini-Reviews in Medicinal Chemistry, vol. 4, no. 6, pp. 625–632, 2004.
[8]  C. T. Supuran, “Carbonic anhydrase inhibitors in the treatment and prophylaxis of obesity,” Expert Opinion on Therapeutic Patents, vol. 13, no. 10, pp. 1545–1550, 2003.
[9]  C. T. Supuran, A. Scozzafava, F. Mincione et al., “Carbonic anhydrase inhibitors. Part 60. The topical intraocular pressure-lowering properties of metal complexes of a heterocyclic sulfonamide: influence of the metal ion upon biological activity,” European Journal of Medicinal Chemistry, vol. 34, no. 7-8, pp. 585–595, 1999.
[10]  M. S. Kyll?nen, S. Parkkila, H. Rajaniemi et al., “Localization of carbonic anhydrase XII to the basolateral membrane of H+-secreting cells of mouse and rat kidney,” Journal of Histochemistry and Cytochemistry, vol. 51, no. 9, pp. 1217–1224, 2003.
[11]  S. Elleuche and S. P?ggeler, “Evolution of carbonic anhydrases in fungi,” Current Genetics, vol. 55, no. 2, pp. 211–222, 2009.
[12]  M. Eriksson, J. Karlsson, Z. Ramazanov, P. Gardestr?m, and G. Samuelsson, “Discovery of an algal mitochondrial carbonic anhydrase: molecular cloning and characterization of a low-CO2-induced polypeptide in Chlamydomonas reinhardtii,” Proceedings of the National Academy of Sciences of the United States of America, vol. 93, no. 21, pp. 12031–12034, 1996.
[13]  A. K. C. So and G. S. Espie, “Cloning, characterization and expression of carbonic anhydrase from the Cyanobacterium synechocystis PCC6803,” Plant Molecular Biology, vol. 37, no. 2, pp. 205–215, 1998.
[14]  G. Amoroso, L. Morell-Avrahov, D. Müller, K. Klug, and D. Sültemeyer, “The gene NCE103 (YNL036w) from Saccharomyces cerevisiae encodes a functional carbonic anhydrase and its transcription is regulated by the concentration of inorganic carbon in the medium,” Molecular Microbiology, vol. 56, no. 2, pp. 549–558, 2005.
[15]  M. B. Guilloton, J. J. Korte, A. F. Lamblin, J. A. Fuchs, and P. M. Anderson, “Carbonic anhydrase in Escherichia coli—a product of the cyn operon,” Journal of Biological Chemistry, vol. 267, no. 6, pp. 3731–3734, 1992.
[16]  K. S. Smith, C. Jakubzick, T. S. Whittam, and J. G. Ferry, “Carbonic anhydrase is an ancient enzyme widespread in prokaryotes,” Proceedings of the National Academy of Sciences of the United States of America, vol. 96, no. 26, pp. 15184–15189, 1999.
[17]  R. S. Rowlett, “Structure and catalytic mechanism of the β-carbonic anhydrases,” Biochimica et Biophysica Acta, vol. 1804, no. 2, pp. 362–373, 2010.
[18]  M. R. Sawaya, G. C. Cannon, S. Heinhorst et al., “The structure of β-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two,” Journal of Biological Chemistry, vol. 281, no. 11, pp. 7546–7555, 2006.
[19]  T. Klengel, W.-J. Liang, J. Chaloupka et al., “Fungal adenylyl cyclase integrates CO2 sensing with cAMP signaling and virulence,” Current Biology, vol. 15, no. 22, pp. 2021–2026, 2005.
[20]  C. Hansch, In Exploring QSAR: Fundamentals and Applications, in Chemistry and Biology, American Society, Washington, DC, USA, 1995.
[21]  F. Pacchiano, F. Carta, D. Vullo, A. Scozzafava, and C. T. Supuran, “Inhibition of β-carbonic anhydrases with ureido-substituted benzenesulfonamides,” Bioorganic and Medicinal Chemistry Letters, vol. 21, no. 1, pp. 102–105, 2011.
[22]  ?. Güzel, A. Maresca, R. A. Hall et al., “Carbonic anhydrase inhibitors. The β-carbonic anhydrases from the fungal pathogens Cryptococcus neoformans and Candida albicans are strongly inhibited by substituted-phenyl-1H-indole-5-sulfonamides,” Bioorganic and Medicinal Chemistry Letters, vol. 20, no. 8, pp. 2508–2511, 2010.
[23]  I. Nishimori, T. Minakuchi, T. Kohsaki et al., “Carbonic anhydrase inhibitors: the β-carbonic anhydrase from Helicobacter pylori is a new target for sulfonamide and sulfamate inhibitors,” Bioorganic and Medicinal Chemistry Letters, vol. 17, no. 13, pp. 3585–3594, 2007.
[24]  A. Bertucci, A. Innocenti, A. Scozzafava, S. Tambutté, D. Zoccola, and C. T. Supuran, “Carbonic anhydrase inhibitors. Inhibition studies with anions and sulfonamides of a new cytosolic enzyme from the scleractinian coral Stylophora pistillata,” Bioorganic and Medicinal Chemistry Letters, vol. 21, no. 2, pp. 710–714, 2011.
[25]  S. M. Monti, A. Maresca, F. Viparelli et al., “Dithiocarbamates are strong inhibitors of the beta-class fungal carbonic anhydrases from Cryptococcus neoformans, Candida albicans and Candida glabrata,” Bioorganic and Medicinal Chemistry Letters, vol. 22, no. 2, pp. 859–862, 2012.
[26]  M. Rami, A. Innocenti, J.-L. Montero, A. Scozzafava, J.-Y. Winum, and C. T. Supuran, “Synthesis of rhodamine B-benzenesulfonamide conjugates and their inhibitory activity against human α- and bacterial/fungal β-carbonic anhydrases,” Bioorganic and Medicinal Chemistry Letters, vol. 21, no. 18, pp. 5210–5213, 2011.
[27]  S. Isik, F. Kockar, M. Aydin et al., “Carbonic anhydrase inhibitors: inhibition of the β-class enzyme from the yeast Saccharomyces cerevisiae with sulfonamides and sulfamates,” Bioorganic and Medicinal Chemistry, vol. 17, no. 3, pp. 1158–1163, 2009.
[28]  I. Nishimori, T. Minakuchi, D. Vullo, A. Scozzafava, and C. T. Supuran, “Inhibition studies of the β-carbonic anhydrases from the bacterial pathogen Salmonella enterica serovar Typhimurium with sulfonamides and sulfamates,” Bioorganic and Medicinal Chemistry, vol. 19, no. 16, pp. 5023–5030, 2011.
[29]  A. Innocenti, R. A. Hall, C. Schlicker et al., “Carbonic anhydrase inhibitors. Inhibition and homology modeling studies of the fungal β-carbonic anhydrase from Candida albicans with sulfonamides,” Bioorganic and Medicinal Chemistry, vol. 17, no. 13, pp. 4503–4509, 2009.
[30]  ?. Güzel, A. Maresca, A. Scozzafava, A. Salman, A. T. Balaban, and C. T. Supuran, “Discovery of low nanomolar and subnanomolar inhibitors of the mycobacterial β-carbonic anhydrases Rv1284 and Rv3273,” Journal of Medicinal Chemistry, vol. 52, no. 13, pp. 4063–4067, 2009.
[31]  A. Innocenti, R. A. Hall, C. Schlicker, F. A. Mühlschlegel, and C. T. Supuran, “Carbonic anhydrase inhibitors. Inhibition of the β-class enzymes from the fungal pathogens Candida albicans and Cryptococcus neoformans with aliphatic and aromatic carboxylates,” Bioorganic and Medicinal Chemistry, vol. 17, no. 7, pp. 2654–2657, 2009.
[32]  B. Pothen, V. Singh, S. Kumar, and M. Tiwari, “Structural optimization of new class of selective carbonic anhydrase inhibitors: QSAR approach,” Indian Journal of Chemistry B, vol. 49, no. 2, pp. 224–233, 2010.
[33]  V-life MDS3.5 Vlife science technologies pvt. Ltd, 1 akshay residency, plot 50 anand park, aundh pune 411007.
[34]  “Chemdraw ultra 8.0 and Chem3D ultra,” Tech. Rep., Cambridge Soft Corporation, Cambridge, Mass, USA, http://www.cambridgesoft.com.
[35]  R. G. Khalifah, “The carbon dioxide hydration activity of carbonic anhydrase. I. Stop-flow kinetic studies on the native human isoenzymes B and C,” Journal of Biological Chemistry, vol. 246, no. 8, pp. 2561–2573, 1971.
[36]  R. Veerasamy, H. Rajak, A. Jain, et al., “Validation of QSAR models-strategies and importance,” International Journal of Drug Design & Discovery, vol. 3, pp. 511–519, 2011.
[37]  A. Golbraikh and A. Tropsha, “Beware of q2 ,” Journal of Molecular Graphics and Modelling, vol. 20, no. 4, pp. 269–276, 2002.
[38]  A. Tropsha, P. Gramatica, and V. K. Gombar, “The importance of being earnest: validation is the absolute essential for successful application and interpretation of QSPR models,” QSAR and Combinatorial Science, vol. 22, no. 1, pp. 69–77, 2003.
[39]  H. Kubinyl, “Variable selection in QSAR studies. I. An evolutionary algorithm,” Quantitative Structure-Activity Relationships, vol. 13, no. 3, pp. 285–294, 1994.
[40]  R. P. Verma and C. Hansch, “An approach toward the problem of outliers in QSAR,” Bioorganic and Medicinal Chemistry, vol. 13, no. 15, pp. 4597–4621, 2005.

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133