全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

Crystal Structure and Molecular Mechanics Modelling of 2-(4-Amino-3-benzyl-2-thioxo-2,3-dihydrothiazol-5-yl)benzoxazole

DOI: 10.1155/2014/938360

Full-Text   Cite this paper   Add to My Lib

Abstract:

The crystal structure of the title compound, 2-(4-amino-3-benzyl-2-thioxo-2,3-dihydrothiazol-5-yl)benzoxazole, was determined. The crystal has P1 space group and triclinic system with unit cell parameters a = 5.174(3)??, b = 6.411(6)??, c = 12.369(10)??, α = 86.021(4)°, β = 84.384(5)°, and γ = 77.191(5)°. The structure consists of benzoxazole group connected with benzyl via thiazole (attached with amino and thione). Benzoxazole and thiazole rings are almost planar (maximum deviation at C1, ?0.013(3)??, and C10, 0.0041(3)??, resp.). The phenyl ring is nearly perpendicular to both thiazole and benzoxazole rings. A network of intermolecular hydrogen bonds and intermolecular interactions stabilizes the structure, forming parallel layers. The molecular geometry obtained using single crystal analysis is discussed along with results of the molecular mechanics modeling (MM), and the results showed the same cis conformation between benzoxazole nitrogen atom and the amino group. 1. Introduction Organic compounds natural or synthetic are the main source of medical agents and drugs, so knowledge of their molecular structure and conformation is important because it has a direct correlation with their activity. Among of bioactive organic compounds are benzoxazole derivatives; previous reports revealed that substituted benzoxazoles possess diverse chemotherapeutic activities including antibiotic, antimicrobial, antiviral, topoisomerase inhibitors, and antitumor activities [1–3]. Benzoxazoles possess the structural isosteres of natural nucleotides (such as adenine and guanine) which allow them to interact easily with the biopolymers of living systems and different kinds of biological activity can be obtained [4]. Benzoxazoles are widely used in industry, among them 2-phenylbenzoxazoles used as organic brightening laser dyes. Other industrial applications were reported, such as dopants in organic light-emitting diodes, chromophores, and chemosensors [5, 6]. Molecular mechanics calculations are an efficient tool and an important aspect of molecular modeling, used for predicting structure and energy of molecules and heats of formation and used to compare different conformations of the same molecule, further reading in [7, 8]. As reported previously, knowing the structure and conformation of 2-substituted benzoxazole derivatives gives important information for predicting their mode of orientation on the receptor [1]. So, more bioactive drugs in the pharmaceutical industry can be designed. As a result this provides the pharmaceutical community with useful information which

References

[1]  S. M. Rida, F. A. Ashour, S. A. M. El-Hawash, M. M. ElSemary, M. H. Badr, and M. A. Shalaby, “Synthesis of some novel benzoxazole derivatives as anticancer, anti-HIV-1 and antimicrobial agents,” European Journal of Medicinal Chemistry, vol. 40, no. 9, pp. 949–959, 2005.
[2]  N. D. Jayanna, H. M. Vagdevi, J. C. Dharshan, T. R. Prashith Kekuda, B. C. Hanumanthappa, and B. C. Gowdarshivannanavar, “Synthesis and biological evaluation of novel 5, 7-dichloro-1, 3-benzoxazole derivatives,” Journal of Chemistry, vol. 2013, Article ID 864385, 9 pages, 2013.
[3]  J. Karolak-Wojciechowska, A. Mrozek, R. Czylkowski, B. Tekiner-Gulbas, E. Aki-?ener, and I. Yal?in, “Five-membered heterocycles. Part IV. Impact of heteroatom on benzazole aromaticity,” Journal of Molecular Structure, vol. 839, no. 1–3, pp. 125–131, 2007.
[4]  S. M. Sondhi, N. Singh, A. Kumar, O. Lozach, and L. Meijer, “Synthesis, anti-inflammatory, analgesic and kinase (CDK-1, CDK-5 and GSK-3) inhibition activity evaluation of benzimidazole/benzoxazole derivatives and some Schiff's bases,” Bioorganic and Medicinal Chemistry, vol. 14, no. 11, pp. 3758–3765, 2006.
[5]  K. Guzow, D. Szmigiel, D. Wróblewski, M. Milewska, J. Karolczak, and W. Wiczk, “New fluorescent probes based on 3-(2-benzoxazol-5-yl)alanine skeleton-Synthesis and photophysical properties,” Journal of Photochemistry and Photobiology A: Chemistry, vol. 187, no. 1, pp. 87–96, 2007.
[6]  S. I. Um, “The synthesis and properties of benzoxazole fluorescent brighteners for application to polyester fibers,” Dyes and Pigments, vol. 75, no. 1, pp. 185–188, 2007.
[7]  A. Leach, Molecular Modelling: Principles and Applications, Prentice Hall, New York, NY, USA, 2nd edition, 2001.
[8]  N. L. Allinger, “Conformational analysis. 130. MM2. A hydrocarbon force field utilizing V1 and V2 torsional terms,” Journal of the American Chemical Society, vol. 99, no. 25, pp. 8127–8134, 1977.
[9]  National Research Center of Egypt (NRC), X-ray Crystallography Laboratory, 2014, http://www.xrdlab-nrc-eg.org/.
[10]  Enraf-Nonius, COLLECT, Nonius BV, Delft, The Netherlands, 1998.
[11]  Z. Otwinowski and W. Minor, “Processing of X-ray diffraction data collected in oscillation mode,” Methods in Enzymology, vol. 276, pp. 307–326, 1997.
[12]  A. Altomare, G. Cascarano, C. Giacovazzo et al., “SIR92—a program for automatic solution of crystal structures by direct methods,” Journal of Applied Crystallography, vol. 27, no. 3, pp. 435–436, 1994.
[13]  S. Mackay, C. J. Gilmore, C. Edwards, N. Stewart, and K. Shankland, “MaXus computer program for the solution and refinement of crystal structures,” Bruker Nonius, the Netherlands, MacScience, Japan & the University of Glasgow, 1999.
[14]  P. W. Betteridge, J. R. Carruthers, R. I. Cooper, K. Prout, and D. J. Watkin, “CRYSTALS version 12: software for guided crystal structure analysis,” Journal of Applied Crystallography, vol. 36, p. 1487, 2003.
[15]  H. D. Flack, “On enantiomorph-polarity estimation,” Acta Crystallographica A, vol. 39, pp. 876–881, 1983.
[16]  L. J. Farrugia, “ORTEP-3 for windows—a version of ORTEP-III with a graphical user interface (GUI),” Journal of Applied Crystallography, vol. 30, no. 5, p. 565, 1997.
[17]  K. Brandenburg, DIAMOND Software, Crystal Impact GbR, Bonn, Germany, 2012.
[18]  J. D. Gans and D. Shalloway, “Qmol: a program for molecular visualization on Windows-based PCs,” Journal of Molecular Graphics and Modelling, vol. 19, no. 6, pp. 557–559, 2001.
[19]  HyperChem (TM) Professional 7. 51, Hypercube, Inc., Gainesville, Fla, USA.
[20]  N. L. Allinger and Y. H. Yuh, Quantum Chemistry Program Exchange, Bloomington, Indiana, Program No. 395, Molecular Mechanics, American Chemical Society, Washington, DC, USA, 1982.
[21]  J. H. Lii and N. L. Allinger, “Molecular Mechanics. The MM3 force field for hydrocarbons. 3. The van der Waals' potentials and crystal data for aliphatic and aromatic hydrocarbons,” Journal of the American Chemical Society, vol. 111, no. 23, pp. 8576–8582, 1989.
[22]  Y. Qu, S. L. Zhang, L. Teng, X. Y. Xia, and Y. Zhang, “2-(4-Amino-phen-yl)-1,3-benzoxazole,” Acta Crystallographica E, vol. 64, no. 7, p. o1210, 2008.
[23]  D. E. Lynch, “2-Amino-5-chloro-1,3-benzoxazole,” Acta Crystallographica Section E, vol. 60, no. 10, pp. o1715–o1716, 2004.
[24]  J. C. Burley, R. Gilmour, T. J. Prior, and G. M. Day, “Structural diversity in imidazolidinone organocatalysts: a synchrotron and computational study,” Acta Crystallographica C, vol. 64, no. 1, pp. o10–o14, 2007.
[25]  O. Q. Munro and L. Mariah, “Conformational analysis: crystallographic, mole-cular mechanics and quantum chemical studies of C-H ? O hydrogen bonding in the flexible bis(nosylate) derivative of catechol,” Acta Crystallographica B, vol. 60, no. 5, pp. 598–608, 2004.

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133