Expression of the myogenin (Myog) gene is restricted to skeletal muscle cells where the transcriptional activator turns on a gene expression program that permits the transition from proliferating myoblasts to differentiating myotubes. The strict temporal and spatial regulation on Myog expression in the embryo makes it an ideal gene to study the developmental regulation of tissue-specific expression. Over the last 20 years, our knowledge of the regulation of Myog expression has evolved from the identification of the minimal promoter elements necessary for the gene to be transcribed in muscle, to a mechanistic understanding of how the proteins that bind these DNA elements work together to establish transcriptional competence. Here we present our current understanding of the developmental regulation of gene expression gained from studies of the Myog gene. 1. Introduction The diploid human genome encodes the genes required to establish the ~200 different cell types that make up the body. Each of these different cell types can be defined by the complement of genes that they express. These cell-specific gene expression programs are established through spatially and temporally defined signals from hormones, cytokines, and growth factors that modulate transcription factor activity. Once established, these gene expression programs must then be transmitted to daughter cells through epigenetic mechanisms. Studies in Drosophila have identified Trithorax (TrxG) and Polycomb (PcG) group proteins as the mediators of this epigenetic cellular memory [1]. However, the PcG and TrxG proteins display relatively ubiquitous expression and therefore cannot work in isolation to mediate temporal and spatial regulation of gene expression. Thus, in order to understand how tissue specific patterns of gene expression are established we must examine how the TrxG and PcG proteins work with the transcriptional machinery in specific cells to modulate expression of a particular gene. The skeletal muscle-specific gene myogenin (Myog) is a key developmental regulator for skeletal muscle formation and is one of the better studied tissue-specific genes. The Myog gene encodes a transcription factor of the basic-helix-loop-helix (bHLH) protein family. Displaying expression that is highly restricted, both temporally and spatially, Myog transcripts are first detected in the primary myotome of the developing mouse embryo at around day E9 [2, 3]. Myog then continues to be expressed in all the newly formed skeletal muscle of the trunk and the limb bud during embryonic myogenesis before being
References
[1]
H. W. Brock and C. L. Fisher, “Maintenance of gene expression patterns,” Developmental Dynamics, vol. 232, no. 3, pp. 633–655, 2005.
[2]
D. Sassoon, G. Lyons, W. E. Wright et al., “Expression of two myogenic regulatory factors myogenin and MyoD1 during mouse embryogenesis,” Nature, vol. 341, no. 6240, pp. 303–307, 1989.
[3]
M. Buckingham and D. Montarras, “Skeletal muscle stem cells,” Current Opinion in Genetics and Development, vol. 18, no. 4, pp. 330–336, 2008.
[4]
P. Hasty, A. Bradley, J. H. Morris et al., “Muscle deficiency and neonatal death in mice with a targeted mutation in the myogenin gene,” Nature, vol. 364, no. 6437, pp. 501–506, 1993.
[5]
J. M. Venuti, J. H. Morris, J. L. Vivian, E. N. Olson, and W. H. Klein, “Myogenin is required for late but not early aspects of myogenesis during mouse development,” Journal of Cell Biology, vol. 128, no. 4, pp. 563–576, 1995.
[6]
M. G. Cusella-De Angelis, G. Lyons, C. Sonnino et al., “MyoD, myogenin independent differentiation of primordial myoblasts in mouse somites,” Journal of Cell Biology, vol. 116, no. 5, pp. 1243–1255, 1992.
[7]
P. Zhao, S. Iezzi, E. Carver et al., “Slug is a novel downstream target of MyoD. Temporal profiling in muscle regeneration,” Journal of Biological Chemistry, vol. 277, no. 33, pp. 30091–30101, 2002.
[8]
E. Meadows, J. M. Flynn, and W. H. Klein, “Myogenin regulates exercise capacity but is dispensable for skeletal muscle regeneration in adult mdx mice,” PLoS ONE, vol. 6, no. 1, Article ID e16184, 2011.
[9]
D. G. Edmondson, T. C. Cheng, P. Cserjesi, T. Chakraborty, and E. N. Olson, “Analysis of the myogenin promoter reveals an indirect pathway for positive autoregulation mediated by the muscle-specific enhancer factor MEF-2,” Molecular and Cellular Biology, vol. 12, no. 9, pp. 3665–3677, 1992.
[10]
S. P. Yee and P. W. J. Rigby, “The regulation of myogenin gene expression during the embryonic development of the mouse,” Genes and Development A, vol. 7, no. 7, pp. 1277–1289, 1993.
[11]
O. Ram, A. Goren, I. Amit, et al., “Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells,” Cell, vol. 147, pp. 1628–1639, 2011.
[12]
P. Asp, R. Blum, V. Vethantham et al., “Genome-wide remodeling of the epigenetic landscape during myogenic differentiation,” Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 22, pp. E149–E158, 2011.
[13]
Y. Cao, Z. Yao, D. Sarkar et al., “Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming,” Developmental Cell, vol. 18, no. 4, pp. 662–674, 2010.
[14]
C. H. Washabaugh, M. P. Ontell, S. H. Shand, N. Bradbury, J. A. Kant, and M. Ontell, “Neuronal control of myogenic regulatory factor accumulation in fetal muscle,” Developmental Dynamics, vol. 236, no. 3, pp. 732–745, 2007.
[15]
F. Spitz, J. Demignon, A. Porteu et al., “Expression of myogenin during embryogenesis is controlled by six/sine oculis homeoproteins through a conserved MEF3 binding site,” Proceedings of the National Academy of Sciences of the United States of America, vol. 95, no. 24, pp. 14220–14225, 1998.
[16]
C. A. Berkes, D. A. Bergstrom, B. H. Penn, K. J. Seaver, P. S. Knoepfler, and S. J. Tapscott, “Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential,” Molecular Cell, vol. 14, no. 4, pp. 465–477, 2004.
[17]
M. D. E. Deato and R. Tjian, “Switching of the core transcription machinery during myogenesis,” Genes and Development, vol. 21, no. 17, pp. 2137–2149, 2007.
[18]
T. C. Cheng, M. C. Wallace, J. P. Merlie, and E. N. Olson, “Separable regulatory elements governing myogenin transcription in mouse embryogenesis,” Science, vol. 261, no. 5118, pp. 215–218, 1993.
[19]
C. Laclef, G. Hamard, J. Demignon, E. Souil, C. Houbron, and P. Maire, “Altered myogenesis in Six1-deficient mice,” Development, vol. 130, no. 10, pp. 2239–2252, 2003.
[20]
L. Berghella, L. De Angelis, T. De Buysscher et al., “A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle,” Genes and Development, vol. 22, no. 15, pp. 2125–2138, 2008.
[21]
J. Yao, R. D. Fetter, P. Hu, E. Betzig, and R. Tjian, “Subnuclear segregation of genes and core promoter factors in myogenesis,” Genes and Development, vol. 25, no. 6, pp. 569–580, 2011.
[22]
A. Fuso, G. Ferraguti, F. Grandoni et al., “Early demethylation of non-CpG, CpC-rich, elements in the myogenin 5′-flanking region: a priming effect on the spreading of active demethylation?” Cell Cycle, vol. 9, no. 19, pp. 3965–3976, 2010.
[23]
D. Palacios, D. Summerbell, P. W. J. Rigby, and J. Boyes, “Interplay between DNA methylation and transcription factor availability: implications for developmental activation of the mouse Myogenin gene,” Molecular and Cellular Biology, vol. 30, no. 15, pp. 3805–3815, 2010.
[24]
A. M. Deaton and A. Bird, “CpG islands and the regulation of transcription,” Genes and Development, vol. 25, no. 10, pp. 1010–1022, 2011.
[25]
Y. Oikawa, R. Omori, T. Nishii, Y. Ishida, M. Kawaichi, and E. Matsuda, “The methyl-CpG-binding protein CIBZ suppresses myogenic differentiation by directly inhibiting myogenin expression,” Cell Research, vol. 21, pp. 1578–1590, 2011.
[26]
Y. Liu, A. Chu, I. Chakroun, U. Islam, and A. Blais, “Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation,” Nucleic Acids Research, vol. 38, no. 20, pp. 6857–6871, 2010.
[27]
C. L. Zhang, T. A. McKinsey, and E. N. Olson, “Association of class II histone deacetylases with heterochromatin protein 1: potential role for histone methylation in control of muscle differentiation,” Molecular and Cellular Biology, vol. 22, no. 20, pp. 7302–7312, 2002.
[28]
A. Mal and M. L. Harter, “MyoD is functionally linked to the silencing of a muscle-specific regulatory gene prior to skeletal myogenesis,” Proceedings of the National Academy of Sciences of the United States of America, vol. 100, no. 4, pp. 1735–1739, 2003.
[29]
A. K. Mal, “Histone methyltransferase Suv39h1 represses MyoD-stimulated myogenic differentiation,” The EMBO Journal, vol. 25, no. 14, pp. 3323–3334, 2006.
[30]
M. A. Gillespie, F. Le Grand, A. Scimè et al., “p38-γ-dependent gene silencing restricts entry into the myogenic differentiation program,” Journal of Cell Biology, vol. 187, no. 7, pp. 991–1005, 2009.
[31]
B. M. Ling, N. Bharathy, T. K. Chung, et al., “Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation,” Proceedings of the National Academy of Sciences of the United State, vol. 109, pp. 841–846, 2012.
[32]
V. Sartorelli, P. L. Puri, Y. Hamamori et al., “Acetylation of MyoD directed by PCAF is necessary for the execution of the muscle program,” Molecular Cell, vol. 4, no. 5, pp. 725–734, 1999.
[33]
F. J. Dilworth, K. J. Seaver, A. L. Fishburn, S. L. Htet, and S. J. Tapscott, “In vitro transcription system delineates the distinct roles of the coactivators pCAF and p300 during MyoD/E47-dependent transactivation,” Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 32, pp. 11593–11598, 2004.
[34]
R. Cao, L. Wang, H. Wang et al., “Role of histone H3 lysine 27 methylation in polycomb-group silencing,” Science, vol. 298, no. 5595, pp. 1039–1043, 2002.
[35]
S. Seenundun, S. Rampalli, Q. C. Liu et al., “UTX mediates demethylation of H3K27me3 at muscle-specific genes during myogenesis,” The EMBO Journal, vol. 29, no. 8, pp. 1401–1411, 2010.
[36]
L. Stojic, Z. Jasencakova, C. Prezioso, et al., “Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells,” Epigenetics Chromatin, vol. 4, article 16, 2011.
[37]
A. Mal, M. Sturniolo, R. L. Schiltz, M. K. Ghosh, and M. L. Harter, “A role for histone deacetylase HDAC1 in modulating the transcriptional activity of MyoD: inhibition of the myogenic program,” The EMBO Journal, vol. 20, no. 7, pp. 1739–1753, 2001.
[38]
S. Iezzi, M. Di Padova, C. Serra et al., “Deacetylase inhibitors increase muscle cell size by promoting myoblast recruitment and fusion through induction of follistatin,” Developmental Cell, vol. 6, no. 5, pp. 673–684, 2004.
[39]
J. Lu, T. A. McKinsey, C. L. Zhang, and E. N. Olson, “Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases,” Molecular Cell, vol. 6, no. 2, pp. 233–244, 2000.
[40]
A. Méjat, F. Ramond, R. Bassel-Duby, S. Khochbin, E. N. Olson, and L. Schaeffer, “Histone deacetylase 9 couples neuronal activity to muscle chromatin acetylation and gene expression,” Nature Neuroscience, vol. 8, no. 3, pp. 313–321, 2005.
[41]
H. Tang, P. Macpherson, M. Marvin et al., “A histone deacetylase 4/myogenin positive feedback loop coordinates denervation-dependent gene induction and suppression,” Molecular Biology of the Cell, vol. 20, no. 4, pp. 1120–1131, 2009.
[42]
H. Faralli, E. Martin, N. Core et al., “Teashirt-3, a novel regulator of muscle differentiation, associates with BRG1-associated factor 57 (BAF57) to inhibit myogenin gene expression,” Journal of Biological Chemistry, vol. 286, no. 26, pp. 23498–23510, 2011.
[43]
S. V. Forcales, S. Albini, L. Giordani, et al., “Signal-dependent incorporation of MyoD-BAF60c into Brg1-based SWI/SNF chromatin-remodelling complex,” The EMBO Journal, vol. 31, pp. 301–316, 2011.
[44]
A. Zetser, E. Gredinger, and E. Bengal, “p38 mitogen-activated protein kinase pathway promotes skeletal muscle differentiation: participation of the MEF2C transcription factor,” Journal of Biological Chemistry, vol. 274, no. 8, pp. 5193–5200, 1999.
[45]
E. Perdiguero, V. Ruiz-Bonilla, L. Gresh et al., “Genetic analysis of p38 MAP kinases in myogenesis: fundamental role of p38α in abrogating myoblast proliferation,” The EMBO Journal, vol. 26, no. 5, pp. 1245–1256, 2007.
[46]
F. Lluís, E. Ballestar, M. Suelves, M. Esteller, and P. Mu?oz-Cánoves, “E47 phosphorylation by p38 MAPK promotes MyoD/E47 association and muscle-specific gene transcription,” The EMBO Journal, vol. 24, no. 5, pp. 974–984, 2005.
[47]
S. Rampalli, L. Li, E. Mak et al., “p38 MAPK signaling regulates recruitment of Ash2L-containing methyltransferase complexes to specific genes during differentiation,” Nature Structural and Molecular Biology, vol. 14, no. 12, pp. 1150–1156, 2007.
[48]
B. B. Friday, P. O. Mitchell, K. M. Kegley, and G. K. Pavlath, “Calcineurin initiates skeletal muscle differentiation by activating MEF2 and MyoD,” Differentiation, vol. 71, no. 3, pp. 217–227, 2003.
[49]
C. Serra, D. Palacios, C. Mozzetta et al., “Functional interdependence at the chromatin level between the MKK6/p38 and IGF1/PI3K/AKT pathways during muscle differentiation,” Molecular Cell, vol. 28, no. 2, pp. 200–213, 2007.
[50]
G. Caretti, M. Di Padova, B. Micales, G. E. Lyons, and V. Sartorelli, “The polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation,” Genes and Development, vol. 19, no. 6, pp. 2627–2638, 2005.
[51]
P. L. Puri, V. Sartorelli, X. J. Yang et al., “Differential roles of p300 and PCAF acetyltransferases in muscle differentiation,” Molecular Cell, vol. 1, no. 1, pp. 35–45, 1997.
[52]
J. W. Kim, S. M. Jang, C. H. Kim, et al., “Tip60 regulates myoblast differentiation by enhancing the transcriptional activity of MyoD via their physical interactions,” The FEBS Journal, vol. 278, pp. 4394–4404, 2011.
[53]
J. Choi, H. Jang, H. Kim, S. T. Kim, E. J. Cho, and H. D. Youn, “Histone demethylase LSD1 is required to induce skeletal muscle differentiation by regulating myogenic factors,” Biochemical and Biophysical Research Communications, vol. 401, no. 3, pp. 327–332, 2010.
[54]
L. Verrier, F. Escaffit, C. Chailleux, D. Trouche, and M. Vandromme, “A new isoform of the histone demethylase JMJD2A/KDM4A is required for skeletal muscle differentiation,” PLoS Genetics, vol. 7, no. 6, Article ID e1001390, 2011.
[55]
Y. Tao, R. L. Neppl, Z. P. Huang, et al., “The histone methyltransferase Set7/9 promotes myoblast differentiation and myofibril assembly,” The Journal of Cell Biology, vol. 194, pp. 551–565, 2011.
[56]
H. Wang, R. Cao, L. Xia et al., “Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase,” Molecular Cell, vol. 8, no. 6, pp. 1207–1217, 2001.
[57]
C. S. Dacwag, Y. Ohkawa, S. Pal, S. Sif, and A. N. Imbalzano, “The protein arginine methyltransferase Prmt5 is required for myogenesis because it facilitates ATP-dependent chromatin remodeling,” Molecular and Cellular Biology, vol. 27, no. 1, pp. 384–394, 2007.
[58]
I. L. de La Serna, Y. Ohkawa, C. A. Berkes et al., “MyoD targets chromatin remodeling complexes to the myogenin locus prior to forming a stable DNA-bound complex,” Molecular and Cellular Biology, vol. 25, no. 10, pp. 3997–4009, 2005.
[59]
M. D. E. Deato, M. T. Marr, T. Sottero, C. Inouye, P. Hu, and R. Tjian, “MyoD targets TAF3/TRF3 to activate myogenin transcription,” Molecular Cell, vol. 32, no. 1, pp. 96–105, 2008.
[60]
H. Heller and E. Bengal, “TFIID (TBP) stabilizes the binding of MyoD to its DNA site at the promoter and MyoD facilitates the association of TFIIB with the preinitiation complex,” Nucleic Acids Research, vol. 26, no. 9, pp. 2112–2119, 1998.
[61]
A. Aziz, Q. C. Liu, and F. J. Dilworth, “Regulating a master regulator: establishing tissue-specific gene expression in skeletal muscle,” Epigenetics, vol. 5, no. 8, pp. 691–695, 2010.
[62]
J. H. Yang, Y. Song, J. H. Seol et al., “Myogenic transcriptional activation of MyoD mediated by replication-independent histone deposition,” Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 1, pp. 85–90, 2011.
[63]
R. Margueron, G. Li, K. Sarma et al., “Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms,” Molecular Cell, vol. 32, no. 4, pp. 503–518, 2008.
[64]
K. Mousavi, H. Zare, A. H. Wang, and V. Sartorelli, “Polycomb protein Ezh1 promotes RNA polymerase II elongation,” Molecular Cell, vol. 45, pp. 255–262, 2012.